Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   PND17_RS08350 Genome accession   NZ_CP116772
Coordinates   1582277..1582939 (+) Length   220 a.a.
NCBI ID   WP_002949747.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1577277..1587939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS08325 (PND17_08325) - 1577595..1578305 (+) 711 WP_271298456.1 ABC transporter ATP-binding protein -
  PND17_RS08330 (PND17_08330) - 1578441..1579101 (+) 661 Protein_1624 CBS and ACT domain-containing protein -
  PND17_RS08335 (PND17_08335) cysK 1579268..1580194 (-) 927 WP_271298457.1 cysteine synthase A -
  PND17_RS08340 (PND17_08340) - 1580296..1580922 (-) 627 WP_271298458.1 YigZ family protein -
  PND17_RS08345 (PND17_08345) comFA/cflA 1580977..1582296 (+) 1320 WP_011225516.1 DEAD/DEAH box helicase Machinery gene
  PND17_RS08350 (PND17_08350) comFC/cflB 1582277..1582939 (+) 663 WP_002949747.1 ComF family protein Machinery gene
  PND17_RS08355 (PND17_08355) hpf 1583018..1583566 (+) 549 WP_022096635.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PND17_RS08360 (PND17_08360) - 1583631..1584272 (-) 642 Protein_1630 transposase -
  PND17_RS08365 (PND17_08365) gshAB 1584374..1586638 (-) 2265 WP_004198358.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  PND17_RS08370 (PND17_08370) - 1587301..1587501 (+) 201 Protein_1632 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26037.39 Da        Isoelectric Point: 8.9833

>NTDB_id=712945 PND17_RS08350 WP_002949747.1 1582277..1582939(+) (comFC/cflB) [Streptococcus thermophilus strain strain TSGB 4141]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=712945 PND17_RS08350 WP_002949747.1 1582277..1582939(+) (comFC/cflB) [Streptococcus thermophilus strain strain TSGB 4141]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCCCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAAAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441