Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   PND17_RS00970 Genome accession   NZ_CP116772
Coordinates   179252..179899 (-) Length   215 a.a.
NCBI ID   WP_271298239.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174252..184899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS00955 (PND17_00955) holA 176002..177036 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  PND17_RS00960 (PND17_00960) sodA 177130..177735 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  PND17_RS00965 (PND17_00965) - 177833..179212 (+) 1380 WP_271295475.1 serine hydrolase -
  PND17_RS00970 (PND17_00970) cclA/cilC 179252..179899 (-) 648 WP_271298239.1 prepilin peptidase Machinery gene
  PND17_RS00975 (PND17_00975) - 180008..180529 (+) 522 WP_011225768.1 Dps family protein -
  PND17_RS00980 (PND17_00980) - 180618..181055 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  PND17_RS00985 (PND17_00985) - 181166..181372 (+) 207 WP_002950395.1 YqgQ family protein -
  PND17_RS00990 (PND17_00990) - 181365..182333 (+) 969 WP_082308904.1 ROK family glucokinase -
  PND17_RS00995 (PND17_00995) typA 182471..184318 (+) 1848 WP_271298238.1 translational GTPase TypA -
  PND17_RS01000 (PND17_01000) - 184342..184614 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24951.04 Da        Isoelectric Point: 8.3836

>NTDB_id=712863 PND17_RS00970 WP_271298239.1 179252..179899(-) (cclA/cilC) [Streptococcus thermophilus strain strain TSGB 4141]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GIFLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLTSVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=712863 PND17_RS00970 WP_271298239.1 179252..179899(-) (cclA/cilC) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATATTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTGGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGACCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386