Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NP439_RS24405 Genome accession   NZ_CP101914
Coordinates   5141445..5141951 (-) Length   168 a.a.
NCBI ID   WP_040977733.1    Uniprot ID   -
Organism   Oceanobacillus jeddahense strain QA-1986 374     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5136445..5146951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP439_RS24380 (NP439_24380) - 5136797..5137729 (-) 933 WP_040977738.1 YybS family protein -
  NP439_RS24385 (NP439_24385) - 5138673..5139158 (+) 486 WP_040977737.1 hypothetical protein -
  NP439_RS24390 (NP439_24390) - 5139332..5140702 (+) 1371 WP_256708307.1 CitMHS family transporter -
  NP439_RS24395 (NP439_24395) - 5140808..5141002 (+) 195 WP_256708309.1 hypothetical protein -
  NP439_RS24400 (NP439_24400) rpsR 5141178..5141408 (-) 231 WP_040977734.1 30S ribosomal protein S18 -
  NP439_RS24405 (NP439_24405) ssbA 5141445..5141951 (-) 507 WP_040977733.1 single-stranded DNA-binding protein Machinery gene
  NP439_RS24410 (NP439_24410) rpsF 5141967..5142254 (-) 288 WP_040977732.1 30S ribosomal protein S6 -
  NP439_RS24415 (NP439_24415) ychF 5142458..5143558 (-) 1101 WP_256708310.1 redox-regulated ATPase YchF -
  NP439_RS24420 (NP439_24420) - 5143747..5143941 (-) 195 WP_040977730.1 DUF951 domain-containing protein -
  NP439_RS24425 (NP439_24425) - 5144043..5144948 (-) 906 WP_256708311.1 mechanosensitive ion channel family protein -
  NP439_RS24430 (NP439_24430) - 5145190..5146209 (-) 1020 WP_256708312.1 hypothetical protein -
  NP439_RS24435 (NP439_24435) yyaC 5146288..5146887 (+) 600 WP_040977728.1 spore protease YyaC -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18971.70 Da        Isoelectric Point: 4.6010

>NTDB_id=712854 NP439_RS24405 WP_040977733.1 5141445..5141951(-) (ssbA) [Oceanobacillus jeddahense strain QA-1986 374]
MLNRVVLVGRLTRDPDLRYTPSGVAVANFTIAVNRPFSNQQGEREADFINCVVWRRPAENLANYMKKGSMIGVDGRVQTR
NFEGQDGKRVYVTEIVADSVQFLETKGSQGGGQFQSDGYQNNQNNQNQYQQNPFSSNQNQGFNQNQNQEDPFKNNGEPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=712854 NP439_RS24405 WP_040977733.1 5141445..5141951(-) (ssbA) [Oceanobacillus jeddahense strain QA-1986 374]
ATGTTAAATCGTGTCGTATTAGTTGGCAGATTAACGAGGGATCCTGATTTACGCTATACTCCAAGCGGTGTGGCAGTAGC
TAATTTTACGATTGCTGTGAACAGACCTTTTTCCAATCAACAGGGAGAACGCGAAGCAGATTTCATTAACTGTGTCGTTT
GGCGCAGACCTGCTGAAAACCTGGCGAATTATATGAAAAAAGGGAGTATGATTGGTGTAGATGGCCGTGTACAGACACGT
AATTTTGAAGGCCAAGATGGTAAACGGGTTTATGTAACAGAAATTGTTGCAGATAGTGTCCAATTCCTGGAAACAAAAGG
TTCTCAAGGTGGAGGACAGTTTCAATCAGATGGATACCAGAATAACCAAAATAATCAGAACCAATATCAGCAAAATCCAT
TTTCATCAAATCAAAATCAAGGATTTAATCAAAACCAAAATCAGGAAGATCCATTTAAAAATAATGGAGAACCGATTGAT
ATATCAGACGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.286

100

0.649
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.613
  ssb Glaesserella parasuis strain SC1401

36.111

100

0.387
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

63.095

0.375