Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NP440_RS22290 Genome accession   NZ_CP101913
Coordinates   4643638..4644156 (-) Length   172 a.a.
NCBI ID   WP_042528694.1    Uniprot ID   A0A0A1MBC4
Organism   Oceanobacillus oncorhynchi strain QA-1986 526     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4638638..4649156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP440_RS22270 (NP440_22270) - 4639617..4640549 (-) 933 WP_042528703.1 YybS family protein -
  NP440_RS22275 (NP440_22275) - 4641086..4641571 (+) 486 WP_193063757.1 DUF1189 family protein -
  NP440_RS22280 (NP440_22280) - 4641693..4643063 (+) 1371 WP_256705438.1 citrate:proton symporter -
  NP440_RS22285 (NP440_22285) rpsR 4643368..4643598 (-) 231 WP_042528696.1 30S ribosomal protein S18 -
  NP440_RS22290 (NP440_22290) ssbA 4643638..4644156 (-) 519 WP_042528694.1 single-stranded DNA-binding protein Machinery gene
  NP440_RS22295 (NP440_22295) rpsF 4644172..4644459 (-) 288 WP_042528692.1 30S ribosomal protein S6 -
  NP440_RS22300 (NP440_22300) ychF 4644664..4645764 (-) 1101 WP_042528690.1 redox-regulated ATPase YchF -
  NP440_RS22305 (NP440_22305) - 4645958..4646152 (-) 195 WP_256705439.1 DUF951 domain-containing protein -
  NP440_RS22310 (NP440_22310) - 4646257..4647171 (-) 915 WP_256705440.1 mechanosensitive ion channel family protein -
  NP440_RS22315 (NP440_22315) - 4647408..4648427 (-) 1020 WP_193063761.1 hypothetical protein -
  NP440_RS22320 (NP440_22320) yyaC 4648506..4649105 (+) 600 WP_256705441.1 spore protease YyaC -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19383.06 Da        Isoelectric Point: 4.5909

>NTDB_id=712814 NP440_RS22290 WP_042528694.1 4643638..4644156(-) (ssbA) [Oceanobacillus oncorhynchi strain QA-1986 526]
MLNRVVLVGRLTRDPDLRYTPSGVAVANFNIAVNRPFSNQQGDREADFINCVVWRRPAENLANYMKKGSLIGVDGRVQTR
NFEGQDGKRVYVTEIVADSVQFLETKGSQGGGQFQSDGYQNNQNNQNQYQQNPFSSNQNQGFNQNQNQNTSQEDPFKNNG
EPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=712814 NP440_RS22290 WP_042528694.1 4643638..4644156(-) (ssbA) [Oceanobacillus oncorhynchi strain QA-1986 526]
ATGTTAAATCGTGTCGTATTAGTTGGCAGATTAACGAGGGATCCTGATTTACGCTATACACCAAGCGGTGTGGCAGTAGC
TAATTTTAATATTGCTGTGAACAGACCTTTTTCAAATCAACAGGGAGATCGCGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGCAGACCTGCGGAGAACCTGGCGAATTATATGAAAAAAGGAAGTTTGATTGGTGTAGATGGCCGTGTACAGACACGT
AATTTTGAAGGCCAGGATGGCAAACGGGTTTATGTAACAGAGATTGTTGCAGATAGTGTTCAATTCTTAGAGACGAAAGG
TTCCCAAGGGGGCGGACAGTTTCAATCGGATGGATACCAGAACAACCAAAATAATCAGAACCAATATCAGCAAAATCCAT
TTTCATCAAATCAAAATCAAGGATTTAATCAAAACCAAAATCAAAATACAAGTCAGGAAGATCCATTTAAAAACAATGGA
GAACCAATTGACATATCAGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1MBC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.286

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

60.345

100

0.61
  ssb Glaesserella parasuis strain SC1401

35.556

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

61.628

0.36