Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J73_RS02945 | Genome accession | NZ_AP018780 |
| Coordinates | 591898..592311 (+) | Length | 137 a.a. |
| NCBI ID | WP_048951463.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain CHBN-IV-1 isolate 13H36 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 586898..597311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J73_RS02925 (CHBNIV1_05500) | - | 587386..589980 (-) | 2595 | WP_221253385.1 | penicillin-binding protein 1A | - |
| K6J73_RS02930 (CHBNIV1_05510) | comA | 590079..590876 (+) | 798 | WP_105872257.1 | pilus assembly protein PilM | Machinery gene |
| K6J73_RS02935 (CHBNIV1_05520) | comB | 590877..591383 (+) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| K6J73_RS02940 (CHBNIV1_05530) | comC | 591380..591901 (+) | 522 | WP_105872258.1 | competence protein ComC | Machinery gene |
| K6J73_RS02945 (CHBNIV1_05540) | comD | 591898..592311 (+) | 414 | WP_048951463.1 | pilus assembly protein PilP | Machinery gene |
| K6J73_RS02950 (CHBNIV1_05550) | comE | 592321..593658 (+) | 1338 | WP_048951464.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| K6J73_RS02955 (CHBNIV1_05560) | - | 593671..594357 (+) | 687 | WP_221253386.1 | ComF family protein | - |
| K6J73_RS02960 (CHBNIV1_05570) | nfuA | 594433..595029 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J73_RS02965 (CHBNIV1_05580) | nudC | 595096..595890 (+) | 795 | WP_221253387.1 | NAD(+) diphosphatase | - |
| K6J73_RS02970 (CHBNIV1_05590) | - | 595926..596516 (+) | 591 | WP_118804715.1 | YjaG family protein | - |
| K6J73_RS02975 (CHBNIV1_05600) | - | 596656..596928 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=71281 K6J73_RS02945 WP_048951463.1 591898..592311(+) (comD) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MKHWFFLIILFFMNCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=71281 K6J73_RS02945 WP_048951463.1 591898..592311(+) (comD) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |