Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K6J73_RS02930 Genome accession   NZ_AP018780
Coordinates   590079..590876 (+) Length   265 a.a.
NCBI ID   WP_105872257.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-IV-1 isolate 13H36     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585079..595876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J73_RS02910 (CHBNIV1_05470) recR 585245..585847 (-) 603 WP_005626527.1 recombination mediator RecR -
  K6J73_RS02915 (CHBNIV1_05480) - 585980..586309 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J73_RS02920 (CHBNIV1_05490) - 586468..587313 (-) 846 WP_221253384.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J73_RS02925 (CHBNIV1_05500) - 587386..589980 (-) 2595 WP_221253385.1 penicillin-binding protein 1A -
  K6J73_RS02930 (CHBNIV1_05510) comA 590079..590876 (+) 798 WP_105872257.1 pilus assembly protein PilM Machinery gene
  K6J73_RS02935 (CHBNIV1_05520) comB 590877..591383 (+) 507 WP_005656467.1 competence protein ComB Machinery gene
  K6J73_RS02940 (CHBNIV1_05530) comC 591380..591901 (+) 522 WP_105872258.1 competence protein ComC Machinery gene
  K6J73_RS02945 (CHBNIV1_05540) comD 591898..592311 (+) 414 WP_048951463.1 pilus assembly protein PilP Machinery gene
  K6J73_RS02950 (CHBNIV1_05550) comE 592321..593658 (+) 1338 WP_048951464.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J73_RS02955 (CHBNIV1_05560) - 593671..594357 (+) 687 WP_221253386.1 ComF family protein -
  K6J73_RS02960 (CHBNIV1_05570) nfuA 594433..595029 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31567.98 Da        Isoelectric Point: 6.0234

>NTDB_id=71278 K6J73_RS02930 WP_105872257.1 590079..590876(+) (comA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSYTPLLENWQRI
ETDLPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=71278 K6J73_RS02930 WP_105872257.1 590079..590876(+) (comA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCATCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTTATACGCCATTACTAGAAAATTGGCAACGAATA
GAAACAGATTTACCCTTTATCGCGCTCGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

96.981

100

0.97
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment