Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NP430_RS17965 | Genome accession | NZ_CP101910 |
| Coordinates | 3992101..3992559 (+) | Length | 152 a.a. |
| NCBI ID | WP_016498916.1 | Uniprot ID | - |
| Organism | Pseudomonas putida strain ATCC 12633 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3982149..3999481 | 3992101..3992559 | within | 0 |
Gene organization within MGE regions
Location: 3982149..3999481
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP430_RS17880 (NP430_17880) | - | 3982149..3983042 (+) | 894 | WP_016498932.1 | LysR family transcriptional regulator | - |
| NP430_RS17885 (NP430_17885) | - | 3983220..3983939 (+) | 720 | WP_016498931.1 | SOS response-associated peptidase family protein | - |
| NP430_RS17890 (NP430_17890) | - | 3983968..3984288 (+) | 321 | WP_016498930.1 | hypothetical protein | - |
| NP430_RS17895 (NP430_17895) | - | 3984389..3985032 (-) | 644 | Protein_3515 | putative metallopeptidase | - |
| NP430_RS17900 (NP430_17900) | - | 3985120..3985362 (+) | 243 | WP_080642775.1 | Pathogenicity locus | - |
| NP430_RS28020 (NP430_17905) | - | 3985400..3985606 (+) | 207 | WP_370529842.1 | type II toxin-antitoxin system HicA family toxin | - |
| NP430_RS17910 (NP430_17910) | - | 3985655..3986080 (+) | 426 | WP_016498927.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| NP430_RS17915 (NP430_17915) | - | 3986337..3986699 (-) | 363 | WP_016498926.1 | hypothetical protein | - |
| NP430_RS17920 (NP430_17920) | - | 3987001..3987363 (-) | 363 | WP_016498925.1 | VOC family protein | - |
| NP430_RS17925 (NP430_17925) | - | 3987717..3987914 (-) | 198 | WP_016498924.1 | hypothetical protein | - |
| NP430_RS17930 (NP430_17930) | - | 3987941..3988825 (-) | 885 | WP_016498923.1 | hypothetical protein | - |
| NP430_RS17935 (NP430_17935) | - | 3988822..3989715 (-) | 894 | WP_016498922.1 | hypothetical protein | - |
| NP430_RS17940 (NP430_17940) | - | 3989786..3990265 (-) | 480 | WP_016498921.1 | hypothetical protein | - |
| NP430_RS17945 (NP430_17945) | - | 3990596..3990937 (-) | 342 | WP_016498920.1 | hypothetical protein | - |
| NP430_RS17950 (NP430_17950) | - | 3990950..3991450 (-) | 501 | WP_016498919.1 | hypothetical protein | - |
| NP430_RS17955 (NP430_17955) | - | 3991506..3991880 (-) | 375 | WP_016498918.1 | DUF3168 domain-containing protein | - |
| NP430_RS17960 (NP430_17960) | - | 3991880..3992104 (+) | 225 | WP_016498917.1 | hypothetical protein | - |
| NP430_RS17965 (NP430_17965) | ssb | 3992101..3992559 (+) | 459 | WP_016498916.1 | single-stranded DNA-binding protein | Machinery gene |
| NP430_RS17970 (NP430_17970) | - | 3992845..3993444 (-) | 600 | WP_016498914.1 | hypothetical protein | - |
| NP430_RS17975 (NP430_17975) | - | 3993542..3993959 (+) | 418 | Protein_3531 | hypothetical protein | - |
| NP430_RS17980 (NP430_17980) | - | 3994190..3995134 (-) | 945 | WP_162471771.1 | hypothetical protein | - |
| NP430_RS17985 (NP430_17985) | - | 3995163..3995816 (+) | 654 | Protein_3533 | DUF2786 domain-containing protein | - |
| NP430_RS17990 (NP430_17990) | - | 3995904..3996125 (-) | 222 | WP_016498909.1 | hypothetical protein | - |
| NP430_RS17995 (NP430_17995) | - | 3996246..3996797 (+) | 552 | WP_016498908.1 | hypothetical protein | - |
| NP430_RS18000 (NP430_18000) | - | 3996837..3997082 (+) | 246 | WP_016498907.1 | DUF4224 domain-containing protein | - |
| NP430_RS18005 (NP430_18005) | - | 3997084..3998133 (+) | 1050 | WP_016498906.1 | tyrosine-type recombinase/integrase | - |
| NP430_RS18015 (NP430_18015) | sohB | 3998462..3999481 (-) | 1020 | WP_016498905.1 | protease SohB | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.98 Da Isoelectric Point: 7.2440
>NTDB_id=712697 NP430_RS17965 WP_016498916.1 3992101..3992559(+) (ssb) [Pseudomonas putida strain ATCC 12633]
MSRGVNKVSLVGTCGQDPDVRYLPNGNAVTNLSLATSEQWTDNQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRPQGHQTGQIPDRQPRQQRPARQQQNQQSAPPDHDSFDD
MSRGVNKVSLVGTCGQDPDVRYLPNGNAVTNLSLATSEQWTDNQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRPQGHQTGQIPDRQPRQQRPARQQQNQQSAPPDHDSFDD
Nucleotide
Download Length: 459 bp
>NTDB_id=712697 NP430_RS17965 WP_016498916.1 3992101..3992559(+) (ssb) [Pseudomonas putida strain ATCC 12633]
ATGAGTCGCGGGGTCAACAAGGTCAGTTTGGTAGGAACCTGCGGCCAAGACCCTGACGTGCGCTACCTGCCGAACGGCAA
CGCCGTCACAAACCTCAGCCTGGCCACAAGCGAGCAGTGGACTGACAACCAGTCGGGGCAGAAGGTCGAGCGCACAGAGT
GGCACCGGGTGTCGCTGTTCGGAAAGGTCGCCGAGATTGCCGGCGAATACCTGCGAAAGGGCTCCCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACGGAAATCATCGTGGACATCAACGGGAC
CATGCAGCTACTCGGTAGCCGGCCGCAGGGTCATCAAACAGGGCAAATCCCCGATAGGCAGCCACGTCAACAACGCCCCG
CCCGCCAGCAGCAGAACCAGCAGTCAGCGCCGCCTGACCACGACAGCTTCGACGACTAA
ATGAGTCGCGGGGTCAACAAGGTCAGTTTGGTAGGAACCTGCGGCCAAGACCCTGACGTGCGCTACCTGCCGAACGGCAA
CGCCGTCACAAACCTCAGCCTGGCCACAAGCGAGCAGTGGACTGACAACCAGTCGGGGCAGAAGGTCGAGCGCACAGAGT
GGCACCGGGTGTCGCTGTTCGGAAAGGTCGCCGAGATTGCCGGCGAATACCTGCGAAAGGGCTCCCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACGGAAATCATCGTGGACATCAACGGGAC
CATGCAGCTACTCGGTAGCCGGCCGCAGGGTCATCAAACAGGGCAAATCCCCGATAGGCAGCCACGTCAACAACGCCCCG
CCCGCCAGCAGCAGAACCAGCAGTCAGCGCCGCCTGACCACGACAGCTTCGACGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.494 |
100 |
0.572 |
| ssb | Neisseria gonorrhoeae MS11 |
47.368 |
100 |
0.474 |
| ssb | Neisseria meningitidis MC58 |
46 |
98.684 |
0.454 |
| ssb | Glaesserella parasuis strain SC1401 |
54.622 |
78.289 |
0.428 |