Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NP430_RS02715 Genome accession   NZ_CP101910
Coordinates   616920..617471 (+) Length   183 a.a.
NCBI ID   WP_016497749.1    Uniprot ID   A0A0Q4N073
Organism   Pseudomonas putida strain ATCC 12633     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 611920..622471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP430_RS02700 (NP430_02700) bfr 612018..612482 (+) 465 WP_003255449.1 bacterioferritin -
  NP430_RS02705 (NP430_02705) uvrA 612552..615386 (-) 2835 WP_016497747.1 excinuclease ABC subunit UvrA -
  NP430_RS02710 (NP430_02710) - 615516..616910 (+) 1395 WP_016497748.1 MFS transporter -
  NP430_RS02715 (NP430_02715) ssb 616920..617471 (+) 552 WP_016497749.1 single-stranded DNA-binding protein Machinery gene
  NP430_RS02720 (NP430_02720) - 617673..619067 (-) 1395 WP_041167519.1 PLP-dependent aminotransferase family protein -
  NP430_RS02725 (NP430_02725) - 619478..620503 (+) 1026 WP_016497751.1 TauD/TfdA family dioxygenase -
  NP430_RS02730 (NP430_02730) - 620535..621320 (+) 786 WP_016484669.1 TSUP family transporter -
  NP430_RS02735 (NP430_02735) - 621345..622106 (+) 762 WP_016497752.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20301.40 Da        Isoelectric Point: 5.9286

>NTDB_id=712686 NP430_RS02715 WP_016497749.1 616920..617471(+) (ssb) [Pseudomonas putida strain ATCC 12633]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=712686 NP430_RS02715 WP_016497749.1 616920..617471(+) (ssb) [Pseudomonas putida strain ATCC 12633]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAACAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCGCAAGGCCAGCAGCAAGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCACCGCCTCGCCAGCAGGCCCAGCGTCCGCAACAGGCCCCTCAGCGC
CCAGCGCCCCAGCAGCCTGCACCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4N073

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.216

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.969

100

0.519
  ssb Neisseria meningitidis MC58

48.108

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.486