Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NPS25_RS15460 Genome accession   NZ_CP101904
Coordinates   3142072..3142716 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain Ba-0321     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3137072..3147716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS25_RS15425 (NPS25_15425) - 3138257..3138688 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  NPS25_RS15430 (NPS25_15430) - 3138688..3139029 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NPS25_RS15435 (NPS25_15435) - 3139022..3140503 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  NPS25_RS15440 (NPS25_15440) - 3140509..3140985 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  NPS25_RS15445 (NPS25_15445) - 3140985..3141269 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  NPS25_RS15450 (NPS25_15450) mnhG 3141253..3141627 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  NPS25_RS15455 (NPS25_15455) - 3141667..3142050 (-) 384 WP_095352718.1 hotdog fold thioesterase -
  NPS25_RS15460 (NPS25_15460) comA 3142072..3142716 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NPS25_RS15465 (NPS25_15465) comP 3142797..3145106 (-) 2310 WP_033574914.1 histidine kinase Regulator
  NPS25_RS15470 (NPS25_15470) comX 3145126..3145302 (-) 177 WP_007408675.1 competence pheromone ComX -
  NPS25_RS15475 (NPS25_15475) comQ 3145302..3146240 (-) 939 WP_269465507.1 class 1 isoprenoid biosynthesis enzyme Regulator
  NPS25_RS15480 (NPS25_15480) degQ 3146371..3146511 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NPS25_RS15485 (NPS25_15485) - 3146977..3147318 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=712601 NPS25_RS15460 WP_003152052.1 3142072..3142716(-) (comA) [Bacillus velezensis strain Ba-0321]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=712601 NPS25_RS15460 WP_003152052.1 3142072..3142716(-) (comA) [Bacillus velezensis strain Ba-0321]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864