Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K6J62_RS02970 Genome accession   NZ_AP018779
Coordinates   595699..596496 (+) Length   265 a.a.
NCBI ID   WP_038439365.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590699..601496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS02950 (CHBNIII8_05570) recR 590873..591475 (-) 603 WP_005626527.1 recombination mediator RecR -
  K6J62_RS02955 (CHBNIII8_05580) - 591606..591935 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J62_RS02960 (CHBNIII8_05590) - 592088..592933 (-) 846 WP_110431601.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J62_RS02965 (CHBNIII8_05600) - 593006..595600 (-) 2595 WP_110431600.1 penicillin-binding protein 1A -
  K6J62_RS02970 (CHBNIII8_05610) comA 595699..596496 (+) 798 WP_038439365.1 pilus assembly protein PilM Machinery gene
  K6J62_RS02975 (CHBNIII8_05620) comB 596497..597003 (+) 507 WP_038439363.1 competence protein ComB Machinery gene
  K6J62_RS02980 (CHBNIII8_05630) comC 597000..597521 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  K6J62_RS02985 (CHBNIII8_05640) - 597518..597931 (+) 414 Protein_569 pilus assembly protein PilP -
  K6J62_RS02990 (CHBNIII8_05650) comE 597941..599284 (+) 1344 WP_110431599.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J62_RS02995 (CHBNIII8_05660) - 599281..599505 (+) 225 Protein_571 transposase -
  K6J62_RS03000 (CHBNIII8_05670) - 599637..600323 (+) 687 WP_038439360.1 ComF family protein -
  K6J62_RS03005 (CHBNIII8_05680) nfuA 600399..600995 (+) 597 WP_038439359.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31598.00 Da        Isoelectric Point: 6.0249

>NTDB_id=71243 K6J62_RS02970 WP_038439365.1 595699..596496(+) (comA) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSYTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=71243 K6J62_RS02970 WP_038439365.1 595699..596496(+) (comA) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCATCAAATGCTGTTTTGCGTGCA
TTTCAATATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTTATACGCCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment