Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K6J62_RS02980 Genome accession   NZ_AP018779
Coordinates   597000..597521 (+) Length   173 a.a.
NCBI ID   WP_005662592.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 592000..602521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS02960 (CHBNIII8_05590) - 592088..592933 (-) 846 WP_110431601.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J62_RS02965 (CHBNIII8_05600) - 593006..595600 (-) 2595 WP_110431600.1 penicillin-binding protein 1A -
  K6J62_RS02970 (CHBNIII8_05610) comA 595699..596496 (+) 798 WP_038439365.1 pilus assembly protein PilM Machinery gene
  K6J62_RS02975 (CHBNIII8_05620) comB 596497..597003 (+) 507 WP_038439363.1 competence protein ComB Machinery gene
  K6J62_RS02980 (CHBNIII8_05630) comC 597000..597521 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  K6J62_RS02985 (CHBNIII8_05640) - 597518..597931 (+) 414 Protein_569 pilus assembly protein PilP -
  K6J62_RS02990 (CHBNIII8_05650) comE 597941..599284 (+) 1344 WP_110431599.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J62_RS02995 (CHBNIII8_05660) - 599281..599505 (+) 225 Protein_571 transposase -
  K6J62_RS03000 (CHBNIII8_05670) - 599637..600323 (+) 687 WP_038439360.1 ComF family protein -
  K6J62_RS03005 (CHBNIII8_05680) nfuA 600399..600995 (+) 597 WP_038439359.1 Fe-S biogenesis protein NfuA -
  K6J62_RS03010 (CHBNIII8_05690) nudC 601062..601856 (+) 795 WP_110431598.1 NAD(+) diphosphatase -
  K6J62_RS03015 (CHBNIII8_05700) - 601892..602482 (+) 591 WP_005662597.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19961.15 Da        Isoelectric Point: 10.1286

>NTDB_id=71245 K6J62_RS02980 WP_005662592.1 597000..597521(+) (comC) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MKAFFNDPLTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEGSSRFHEIENELAVKRSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDSPL
QTEIIFQLDRETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=71245 K6J62_RS02980 WP_005662592.1 597000..597521(+) (comC) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGAAAGCTTTTTTTAACGATCCTTTGACTCCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATCGAGGGGAGTTCACGTTTCCATGAAATTGAAA
ATGAGTTAGCGGTGAAACGTTCAGAATTGTTGCATCAGCAGAAAATTTTAACTTCTTTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCACGCAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAGAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCCGAAGACAGCCCATTG
CAAACCGAGATTATTTTTCAGTTAGATAGGGAGACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

98.266

100

0.983
  comC Haemophilus influenzae Rd KW20

97.11

100

0.971

Multiple sequence alignment