Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   K6J62_RS02975 Genome accession   NZ_AP018779
Coordinates   596497..597003 (+) Length   168 a.a.
NCBI ID   WP_038439363.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 591497..602003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS02955 (CHBNIII8_05580) - 591606..591935 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J62_RS02960 (CHBNIII8_05590) - 592088..592933 (-) 846 WP_110431601.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J62_RS02965 (CHBNIII8_05600) - 593006..595600 (-) 2595 WP_110431600.1 penicillin-binding protein 1A -
  K6J62_RS02970 (CHBNIII8_05610) comA 595699..596496 (+) 798 WP_038439365.1 pilus assembly protein PilM Machinery gene
  K6J62_RS02975 (CHBNIII8_05620) comB 596497..597003 (+) 507 WP_038439363.1 competence protein ComB Machinery gene
  K6J62_RS02980 (CHBNIII8_05630) comC 597000..597521 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  K6J62_RS02985 (CHBNIII8_05640) - 597518..597931 (+) 414 Protein_569 pilus assembly protein PilP -
  K6J62_RS02990 (CHBNIII8_05650) comE 597941..599284 (+) 1344 WP_110431599.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J62_RS02995 (CHBNIII8_05660) - 599281..599505 (+) 225 Protein_571 transposase -
  K6J62_RS03000 (CHBNIII8_05670) - 599637..600323 (+) 687 WP_038439360.1 ComF family protein -
  K6J62_RS03005 (CHBNIII8_05680) nfuA 600399..600995 (+) 597 WP_038439359.1 Fe-S biogenesis protein NfuA -
  K6J62_RS03010 (CHBNIII8_05690) nudC 601062..601856 (+) 795 WP_110431598.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19793.72 Da        Isoelectric Point: 9.4939

>NTDB_id=71244 K6J62_RS02975 WP_038439363.1 596497..597003(+) (comB) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRRAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=71244 K6J62_RS02975 WP_038439363.1 596497..597003(+) (comB) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGAGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae Rd KW20

99.405

100

0.994
  comB Haemophilus influenzae 86-028NP

98.81

100

0.988

Multiple sequence alignment