Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NOV99_RS05040 Genome accession   NZ_CP101844
Coordinates   1006093..1006737 (+) Length   214 a.a.
NCBI ID   WP_024417715.1    Uniprot ID   -
Organism   Streptococcus suis strain 2018WUSS151     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1001093..1011737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV99_RS05020 (NOV99_05020) pflA 1002240..1003031 (-) 792 WP_012027587.1 pyruvate formate-lyase-activating protein -
  NOV99_RS05025 (NOV99_05025) - 1003152..1004489 (-) 1338 WP_004194632.1 hemolysin family protein -
  NOV99_RS05030 (NOV99_05030) - 1004622..1005401 (+) 780 WP_024417713.1 ABC transporter ATP-binding protein -
  NOV99_RS05035 (NOV99_05035) - 1005417..1005971 (-) 555 WP_024417714.1 class I SAM-dependent methyltransferase -
  NOV99_RS05040 (NOV99_05040) cclA/cilC 1006093..1006737 (+) 645 WP_024417715.1 A24 family peptidase Machinery gene
  NOV99_RS05045 (NOV99_05045) - 1006845..1008305 (+) 1461 WP_004194619.1 nicotinate phosphoribosyltransferase -
  NOV99_RS05050 (NOV99_05050) nadE 1008318..1009142 (+) 825 WP_004194617.1 ammonia-dependent NAD(+) synthetase -
  NOV99_RS05055 (NOV99_05055) - 1010016..1010543 (-) 528 WP_004194600.1 VanZ family protein -
  NOV99_RS05060 (NOV99_05060) rlmN 1010540..1011652 (-) 1113 WP_004194597.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24209.37 Da        Isoelectric Point: 8.4760

>NTDB_id=712312 NOV99_RS05040 WP_024417715.1 1006093..1006737(+) (cclA/cilC) [Streptococcus suis strain 2018WUSS151]
MKTIILFFLGASIGSFLGLVIDRFPEQPIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=712312 NOV99_RS05040 WP_024417715.1 1006093..1006737(+) (cclA/cilC) [Streptococcus suis strain 2018WUSS151]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GCCCATTATCGCCCCTTCTAGTCACTGTAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCCGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGCTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTATTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.057

99.065

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

46.698

99.065

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

45.283

99.065

0.449