Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NPA43_RS18530 Genome accession   NZ_CP101833
Coordinates   3633219..3633761 (-) Length   180 a.a.
NCBI ID   WP_099682525.1    Uniprot ID   A0A1Q9BE74
Organism   Bacillus pumilus strain NDY-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3628219..3638761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS18500 (NPA43_18500) wrbA 3629702..3630316 (-) 615 WP_230031436.1 NAD(P)H:quinone oxidoreductase -
  NPA43_RS18505 (NPA43_18505) - 3630389..3630997 (-) 609 WP_249704739.1 alpha/beta hydrolase -
  NPA43_RS18510 (NPA43_18510) - 3630994..3631965 (-) 972 WP_249704740.1 ring-cleaving dioxygenase -
  NPA43_RS18515 (NPA43_18515) - 3632060..3632239 (-) 180 WP_230031426.1 hypothetical protein -
  NPA43_RS18520 (NPA43_18520) - 3632339..3632806 (+) 468 WP_230031427.1 hypothetical protein -
  NPA43_RS18525 (NPA43_18525) rpsR 3632939..3633178 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  NPA43_RS18530 (NPA43_18530) ssbA 3633219..3633761 (-) 543 WP_099682525.1 single-stranded DNA-binding protein SsbA Machinery gene
  NPA43_RS18535 (NPA43_18535) rpsF 3633798..3634085 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  NPA43_RS18540 (NPA43_18540) ychF 3634194..3635294 (-) 1101 WP_099682526.1 redox-regulated ATPase YchF -
  NPA43_RS18545 (NPA43_18545) - 3635510..3635716 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  NPA43_RS18550 (NPA43_18550) - 3636011..3637330 (+) 1320 WP_256499196.1 hydrolase -
  NPA43_RS18555 (NPA43_18555) - 3637346..3637756 (+) 411 WP_099728559.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19632.18 Da        Isoelectric Point: 4.6109

>NTDB_id=712262 NPA43_RS18530 WP_099682525.1 3633219..3633761(-) (ssbA) [Bacillus pumilus strain NDY-10]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=712262 NPA43_RS18530 WP_099682525.1 3633219..3633761(-) (ssbA) [Bacillus pumilus strain NDY-10]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTCGGAAATGAACCAAATCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9BE74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

58.889

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.638

100

0.372