Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NPA43_RS11145 Genome accession   NZ_CP101833
Coordinates   2199036..2199329 (-) Length   97 a.a.
NCBI ID   WP_008360227.1    Uniprot ID   A0A2G8IWC0
Organism   Bacillus pumilus strain NDY-10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2194036..2204329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS11095 (NPA43_11095) sinR 2194206..2194541 (+) 336 WP_099726659.1 transcriptional regulator SinR Regulator
  NPA43_RS11100 (NPA43_11100) tasA 2194610..2195410 (-) 801 WP_099726658.1 biofilm matrix protein TasA -
  NPA43_RS11105 (NPA43_11105) sipW 2195468..2196040 (-) 573 WP_099726657.1 signal peptidase I SipW -
  NPA43_RS11110 (NPA43_11110) tapA 2196092..2196619 (-) 528 WP_230030384.1 amyloid fiber anchoring/assembly protein TapA -
  NPA43_RS11115 (NPA43_11115) - 2196871..2197197 (+) 327 WP_099726655.1 YqzG/YhdC family protein -
  NPA43_RS11120 (NPA43_11120) - 2197231..2197419 (-) 189 WP_008360237.1 YqzE family protein -
  NPA43_RS11125 (NPA43_11125) - 2197480..2197863 (-) 384 WP_099726654.1 competence type IV pilus minor pilin ComGG -
  NPA43_RS11130 (NPA43_11130) comGF 2197860..2198387 (-) 528 WP_256498811.1 competence type IV pilus minor pilin ComGF -
  NPA43_RS11135 (NPA43_11135) comGE 2198302..2198613 (-) 312 WP_099726652.1 competence type IV pilus minor pilin ComGE -
  NPA43_RS11140 (NPA43_11140) comGD 2198597..2199043 (-) 447 WP_230030386.1 competence type IV pilus minor pilin ComGD -
  NPA43_RS11145 (NPA43_11145) comGC 2199036..2199329 (-) 294 WP_008360227.1 competence type IV pilus major pilin ComGC Machinery gene
  NPA43_RS11150 (NPA43_11150) comGB 2199346..2200386 (-) 1041 WP_230030387.1 competence type IV pilus assembly protein ComGB -
  NPA43_RS11155 (NPA43_11155) comGA 2200367..2201437 (-) 1071 WP_099726649.1 competence type IV pilus ATPase ComGA Machinery gene
  NPA43_RS11160 (NPA43_11160) - 2201615..2202475 (-) 861 WP_256498812.1 STAS domain-containing protein -
  NPA43_RS11170 (NPA43_11170) - 2202701..2203081 (-) 381 WP_034319603.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NPA43_RS11175 (NPA43_11175) - 2203282..2203524 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NPA43_RS11180 (NPA43_11180) - 2203573..2204211 (-) 639 WP_230030389.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10703.61 Da        Isoelectric Point: 6.8599

>NTDB_id=712236 NPA43_RS11145 WP_008360227.1 2199036..2199329(-) (comGC) [Bacillus pumilus strain NDY-10]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGDVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=712236 NPA43_RS11145 WP_008360227.1 2199036..2199329(-) (comGC) [Bacillus pumilus strain NDY-10]
ATGAATGATAAAGGATTTACACTGTTGGAAATGTTAATTGTCATGCTCGTGATTTCCATTCTTTTACTCATTACCATTCC
GAATATCACACGTCACCATCAAAGCATTCAAGCGAAGGGCTGTGAAGGGCTCAAATCAATGGTGAGTACACAGGTGATGG
CATATGAATTAGAGCATGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCTAATGGAAAAGCCATTGTCATTCAAAACGGCGACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IWC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392