Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NPA43_RS11095 Genome accession   NZ_CP101833
Coordinates   2194206..2194541 (+) Length   111 a.a.
NCBI ID   WP_099726659.1    Uniprot ID   A0A2G8IWD0
Organism   Bacillus pumilus strain NDY-10     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189206..2199541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS11075 (NPA43_11075) gcvT 2189682..2190779 (-) 1098 WP_099726663.1 glycine cleavage system aminomethyltransferase GcvT -
  NPA43_RS11080 (NPA43_11080) - 2191343..2193013 (+) 1671 WP_230030383.1 DEAD/DEAH box helicase -
  NPA43_RS11085 (NPA43_11085) - 2193028..2193825 (+) 798 WP_099726661.1 YqhG family protein -
  NPA43_RS11090 (NPA43_11090) - 2194008..2194172 (+) 165 WP_099726660.1 anti-repressor SinI family protein -
  NPA43_RS11095 (NPA43_11095) sinR 2194206..2194541 (+) 336 WP_099726659.1 transcriptional regulator SinR Regulator
  NPA43_RS11100 (NPA43_11100) tasA 2194610..2195410 (-) 801 WP_099726658.1 biofilm matrix protein TasA -
  NPA43_RS11105 (NPA43_11105) sipW 2195468..2196040 (-) 573 WP_099726657.1 signal peptidase I SipW -
  NPA43_RS11110 (NPA43_11110) tapA 2196092..2196619 (-) 528 WP_230030384.1 amyloid fiber anchoring/assembly protein TapA -
  NPA43_RS11115 (NPA43_11115) - 2196871..2197197 (+) 327 WP_099726655.1 YqzG/YhdC family protein -
  NPA43_RS11120 (NPA43_11120) - 2197231..2197419 (-) 189 WP_008360237.1 YqzE family protein -
  NPA43_RS11125 (NPA43_11125) - 2197480..2197863 (-) 384 WP_099726654.1 competence type IV pilus minor pilin ComGG -
  NPA43_RS11130 (NPA43_11130) comGF 2197860..2198387 (-) 528 WP_256498811.1 competence type IV pilus minor pilin ComGF -
  NPA43_RS11135 (NPA43_11135) comGE 2198302..2198613 (-) 312 WP_099726652.1 competence type IV pilus minor pilin ComGE -
  NPA43_RS11140 (NPA43_11140) comGD 2198597..2199043 (-) 447 WP_230030386.1 competence type IV pilus minor pilin ComGD -
  NPA43_RS11145 (NPA43_11145) comGC 2199036..2199329 (-) 294 WP_008360227.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12987.56 Da        Isoelectric Point: 4.9956

>NTDB_id=712235 NPA43_RS11095 WP_099726659.1 2194206..2194541(+) (sinR) [Bacillus pumilus strain NDY-10]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKISAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKQQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=712235 NPA43_RS11095 WP_099726659.1 2194206..2194541(+) (sinR) [Bacillus pumilus strain NDY-10]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAATCTCCGCCGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAACA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IWD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928