Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NOX35_RS26420 Genome accession   NZ_CP101743
Coordinates   5720220..5720768 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas sp. C11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5715220..5725768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOX35_RS26395 (NOX35_26395) - 5715851..5717248 (-) 1398 WP_256495268.1 sulfatase-like hydrolase/transferase -
  NOX35_RS26400 (NOX35_26400) - 5717235..5718401 (-) 1167 WP_256495269.1 serine hydrolase -
  NOX35_RS26405 (NOX35_26405) - 5718481..5718996 (-) 516 WP_305881698.1 pilin -
  NOX35_RS26415 (NOX35_26415) - 5719185..5719904 (-) 720 WP_182285091.1 FHA domain-containing protein -
  NOX35_RS26420 (NOX35_26420) ssb 5720220..5720768 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  NOX35_RS26425 (NOX35_26425) - 5721030..5722202 (-) 1173 WP_256496966.1 MFS transporter -
  NOX35_RS26430 (NOX35_26430) uvrA 5722429..5725497 (+) 3069 WP_256495273.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=711938 NOX35_RS26420 WP_003064700.1 5720220..5720768(-) (ssb) [Comamonas sp. C11]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=711938 NOX35_RS26420 WP_003064700.1 5720220..5720768(-) (ssb) [Comamonas sp. C11]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGCGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAGCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGTGGTGGTCAGCAGCAAGGCGGCTATGGCAGCGATGACGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCCCCCCAGCGTGCAGCTTCGGGGTTTGACGACATGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451