Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NO932_RS09365 Genome accession   NZ_CP101731
Coordinates   1923870..1924358 (+) Length   162 a.a.
NCBI ID   WP_309161277.1    Uniprot ID   A0AA51YA25
Organism   Pelagibacterium sp. 26DY04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1918870..1929358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO932_RS09345 (NO932_09350) - 1919085..1919234 (-) 150 WP_309161283.1 DUF1127 domain-containing protein -
  NO932_RS09350 (NO932_09355) - 1919377..1920018 (+) 642 WP_309210947.1 glutathione S-transferase family protein -
  NO932_RS09355 (NO932_09360) - 1920093..1920242 (-) 150 WP_309161280.1 DUF1127 domain-containing protein -
  NO932_RS09360 (NO932_09365) uvrA 1920651..1923542 (-) 2892 WP_309210948.1 excinuclease ABC subunit UvrA -
  NO932_RS09365 (NO932_09370) ssb 1923870..1924358 (+) 489 WP_309161277.1 single-stranded DNA-binding protein Machinery gene
  NO932_RS09370 (NO932_09375) - 1924397..1924831 (-) 435 WP_309210950.1 Lrp/AsnC family transcriptional regulator -
  NO932_RS09375 (NO932_09380) rocF 1924943..1925869 (+) 927 WP_309210952.1 arginase -
  NO932_RS09380 (NO932_09385) rocD 1925879..1927081 (+) 1203 WP_309210954.1 ornithine--oxo-acid transaminase -
  NO932_RS09385 (NO932_09390) - 1927078..1928007 (-) 930 WP_309210955.1 YihY/virulence factor BrkB family protein -
  NO932_RS09390 (NO932_09395) - 1928021..1928476 (-) 456 WP_309161270.1 host attachment family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17589.45 Da        Isoelectric Point: 5.9581

>NTDB_id=711852 NO932_RS09365 WP_309161277.1 1923870..1924358(+) (ssb) [Pelagibacterium sp. 26DY04]
MSGSVNKVILVGNLGADPEVRSLPSGSPVVNLRIATSERWRDRNTGEPRERTEWHRVVIFSEGLAKVAQNYLRKGSKVYI
EGQLQTRKWEKDGQDQYTTEIVLQGFNSTLTMLDGRGEGGGENAGGGYGSGGYGGGRQVENRSRPTSAPAFEPGGMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=711852 NO932_RS09365 WP_309161277.1 1923870..1924358(+) (ssb) [Pelagibacterium sp. 26DY04]
ATGTCGGGAAGCGTCAACAAGGTTATTCTGGTGGGCAATCTCGGAGCGGATCCCGAGGTCCGGTCGCTGCCGAGCGGTAG
CCCCGTCGTCAATCTGCGCATCGCGACGTCGGAGCGCTGGCGCGACCGCAATACGGGTGAACCGCGCGAGCGGACCGAAT
GGCACCGCGTGGTGATCTTCAGCGAGGGCCTGGCCAAGGTTGCGCAGAATTACCTGCGCAAGGGCTCCAAGGTTTATATC
GAAGGTCAACTTCAGACCCGGAAGTGGGAAAAGGACGGTCAGGATCAGTATACGACCGAGATCGTGTTGCAGGGGTTCAA
TTCGACCCTGACGATGCTCGACGGGCGCGGTGAAGGCGGCGGCGAGAATGCTGGCGGGGGATATGGCTCCGGCGGATATG
GTGGGGGAAGGCAGGTCGAGAACCGCAGCCGACCGACAAGCGCCCCGGCATTCGAGCCCGGCGGCATGGACGACGACATT
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.538

100

0.58
  ssb Vibrio cholerae strain A1552

53.179

100

0.568
  ssb Neisseria meningitidis MC58

41.53

100

0.469
  ssb Neisseria gonorrhoeae MS11

41.53

100

0.469