Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NPA28_RS20955 Genome accession   NZ_CP101718
Coordinates   4123962..4124480 (-) Length   172 a.a.
NCBI ID   WP_010332657.1    Uniprot ID   A0A9Q6ABZ4
Organism   Bacillus halotolerans strain S-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4118962..4129480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS20925 (NPA28_20925) - 4119468..4120820 (+) 1353 WP_256766560.1 MFS transporter -
  NPA28_RS20930 (NPA28_20930) - 4120851..4121405 (-) 555 WP_256766561.1 maltose acetyltransferase domain-containing protein -
  NPA28_RS20935 (NPA28_20935) - 4121424..4121804 (-) 381 WP_256766562.1 VOC family protein -
  NPA28_RS20940 (NPA28_20940) - 4121861..4122796 (-) 936 WP_106295246.1 LacI family DNA-binding transcriptional regulator -
  NPA28_RS20945 (NPA28_20945) xth 4122856..4123614 (-) 759 WP_227533887.1 exodeoxyribonuclease III -
  NPA28_RS20950 (NPA28_20950) rpsR 4123680..4123919 (-) 240 WP_010332656.1 30S ribosomal protein S18 -
  NPA28_RS20955 (NPA28_20955) ssbA 4123962..4124480 (-) 519 WP_010332657.1 single-stranded DNA-binding protein SsbA Machinery gene
  NPA28_RS20960 (NPA28_20960) rpsF 4124521..4124808 (-) 288 WP_010332658.1 30S ribosomal protein S6 -
  NPA28_RS20965 (NPA28_20965) ychF 4124919..4126019 (-) 1101 WP_024123566.1 redox-regulated ATPase YchF -
  NPA28_RS20970 (NPA28_20970) - 4126146..4128149 (-) 2004 WP_227533886.1 molybdopterin-dependent oxidoreductase -
  NPA28_RS20975 (NPA28_20975) - 4128200..4128406 (-) 207 WP_044160282.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18715.28 Da        Isoelectric Point: 4.7621

>NTDB_id=711799 NPA28_RS20955 WP_010332657.1 4123962..4124480(-) (ssbA) [Bacillus halotolerans strain S-5]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=711799 NPA28_RS20955 WP_010332657.1 4123962..4124480(-) (ssbA) [Bacillus halotolerans strain S-5]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384