Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NPA28_RS17990 Genome accession   NZ_CP101718
Coordinates   3543463..3544152 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain S-5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3538463..3549152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS17955 (NPA28_17955) flgN 3538644..3539126 (-) 483 WP_010332064.1 flagellar protein FlgN -
  NPA28_RS17960 (NPA28_17960) flgM 3539141..3539407 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  NPA28_RS17965 (NPA28_17965) - 3539487..3539906 (-) 420 WP_217827494.1 TIGR03826 family flagellar region protein -
  NPA28_RS17970 (NPA28_17970) comFC 3539980..3540702 (-) 723 WP_217827493.1 phosphoribosyltransferase family protein Machinery gene
  NPA28_RS17975 (NPA28_17975) - 3540666..3540962 (-) 297 WP_044159464.1 late competence development ComFB family protein -
  NPA28_RS17980 (NPA28_17980) comFA 3541019..3542413 (-) 1395 WP_217827492.1 ATP-dependent helicase ComFA Machinery gene
  NPA28_RS17985 (NPA28_17985) - 3542521..3543366 (-) 846 WP_044159470.1 DegV family protein -
  NPA28_RS17990 (NPA28_17990) degU 3543463..3544152 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NPA28_RS17995 (NPA28_17995) degS 3544235..3545392 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  NPA28_RS18000 (NPA28_18000) - 3545609..3546262 (+) 654 WP_044159478.1 YigZ family protein -
  NPA28_RS18005 (NPA28_18005) - 3546262..3547440 (+) 1179 WP_202657927.1 LCP family protein -
  NPA28_RS18010 (NPA28_18010) - 3547515..3548591 (-) 1077 WP_044159481.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=711791 NPA28_RS17990 WP_003219701.1 3543463..3544152(-) (degU) [Bacillus halotolerans strain S-5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=711791 NPA28_RS17990 WP_003219701.1 3543463..3544152(-) (degU) [Bacillus halotolerans strain S-5]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1