Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NPA28_RS17970 Genome accession   NZ_CP101718
Coordinates   3539980..3540702 (-) Length   240 a.a.
NCBI ID   WP_217827493.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3534980..3545702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS17935 (NPA28_17935) fliW 3535122..3535553 (-) 432 WP_101864693.1 flagellar assembly protein FliW -
  NPA28_RS17940 (NPA28_17940) - 3535574..3536149 (-) 576 WP_256766433.1 DUF6470 family protein -
  NPA28_RS17945 (NPA28_17945) flgL 3536196..3537092 (-) 897 WP_059292439.1 flagellar hook-associated protein FlgL -
  NPA28_RS17950 (NPA28_17950) flgK 3537102..3538625 (-) 1524 WP_217827495.1 flagellar hook-associated protein FlgK -
  NPA28_RS17955 (NPA28_17955) flgN 3538644..3539126 (-) 483 WP_010332064.1 flagellar protein FlgN -
  NPA28_RS17960 (NPA28_17960) flgM 3539141..3539407 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  NPA28_RS17965 (NPA28_17965) - 3539487..3539906 (-) 420 WP_217827494.1 TIGR03826 family flagellar region protein -
  NPA28_RS17970 (NPA28_17970) comFC 3539980..3540702 (-) 723 WP_217827493.1 phosphoribosyltransferase family protein Machinery gene
  NPA28_RS17975 (NPA28_17975) - 3540666..3540962 (-) 297 WP_044159464.1 late competence development ComFB family protein -
  NPA28_RS17980 (NPA28_17980) comFA 3541019..3542413 (-) 1395 WP_217827492.1 ATP-dependent helicase ComFA Machinery gene
  NPA28_RS17985 (NPA28_17985) - 3542521..3543366 (-) 846 WP_044159470.1 DegV family protein -
  NPA28_RS17990 (NPA28_17990) degU 3543463..3544152 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NPA28_RS17995 (NPA28_17995) degS 3544235..3545392 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 26979.23 Da        Isoelectric Point: 8.8457

>NTDB_id=711789 NPA28_RS17970 WP_217827493.1 3539980..3540702(-) (comFC) [Bacillus halotolerans strain S-5]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNAFSSEFSAVYPDKRLVLVPIPLSEERKAERGFNQSQMLAECL
NRPIINPLIRLNNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGKAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=711789 NPA28_RS17970 WP_217827493.1 3539980..3540702(-) (comFC) [Bacillus halotolerans strain S-5]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAACAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGCGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCAATAATAAGCGCTTTTAAAAATGCCTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCCATTCCGTTAAGCGAAGAACGGAAAGCAGAACGCGGTTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCATCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAAAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGCTCGGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCAAAGCTGGTTCTGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

75.833

100

0.758