Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NPA28_RS17980 Genome accession   NZ_CP101718
Coordinates   3541019..3542413 (-) Length   464 a.a.
NCBI ID   WP_217827492.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3536019..3547413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS17945 (NPA28_17945) flgL 3536196..3537092 (-) 897 WP_059292439.1 flagellar hook-associated protein FlgL -
  NPA28_RS17950 (NPA28_17950) flgK 3537102..3538625 (-) 1524 WP_217827495.1 flagellar hook-associated protein FlgK -
  NPA28_RS17955 (NPA28_17955) flgN 3538644..3539126 (-) 483 WP_010332064.1 flagellar protein FlgN -
  NPA28_RS17960 (NPA28_17960) flgM 3539141..3539407 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  NPA28_RS17965 (NPA28_17965) - 3539487..3539906 (-) 420 WP_217827494.1 TIGR03826 family flagellar region protein -
  NPA28_RS17970 (NPA28_17970) comFC 3539980..3540702 (-) 723 WP_217827493.1 phosphoribosyltransferase family protein Machinery gene
  NPA28_RS17975 (NPA28_17975) - 3540666..3540962 (-) 297 WP_044159464.1 late competence development ComFB family protein -
  NPA28_RS17980 (NPA28_17980) comFA 3541019..3542413 (-) 1395 WP_217827492.1 ATP-dependent helicase ComFA Machinery gene
  NPA28_RS17985 (NPA28_17985) - 3542521..3543366 (-) 846 WP_044159470.1 DegV family protein -
  NPA28_RS17990 (NPA28_17990) degU 3543463..3544152 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NPA28_RS17995 (NPA28_17995) degS 3544235..3545392 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  NPA28_RS18000 (NPA28_18000) - 3545609..3546262 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52771.80 Da        Isoelectric Point: 9.6072

>NTDB_id=711790 NPA28_RS17980 WP_217827492.1 3541019..3542413(-) (comFA) [Bacillus halotolerans strain S-5]
MQTKTSESNSLFSKELQQQLQGRHLLRTEIPFSDEIIDWHIEHGYISAEGSISKNKWGYRCNRCGQNDQHYFSSYHSSGE
DKVYCRSCVMMGRVSEDVSLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEALSKQEELLIWAVCGAGKTELLFPG
IELALNLRLRVCIATPRTDVVLELAPRLNAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIIDEVDAFP
YSADHTLQFAVQKARKKNSTLVFLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISVLEKAASCFKDMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQAG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=711790 NPA28_RS17980 WP_217827492.1 3541019..3542413(-) (comFA) [Bacillus halotolerans strain S-5]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAG
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGGGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACATTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTTCTTTATATTCGTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGATGTCTTAA
TTGAAGCACTTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATTTAAGACTGCGTGTTTGTATTGCAACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAATGCTGCATTTCAGGGTGCTGATATTTCAGCTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCATTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCATACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTTTCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAAC
CATTGCCAGAACCGCGTTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTTTGGAAAAGGCTGC
TTCTTGTTTTAAAGATATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAGCAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAGCATATAAAAATAATGA
ATGAATTGGCTCTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.061

98.707

0.83