Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   NM620_RS05060 Genome accession   NZ_CP101694
Coordinates   1044681..1045280 (+) Length   199 a.a.
NCBI ID   WP_256383893.1    Uniprot ID   -
Organism   Photobacterium toruni strain WD2103     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039681..1050280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM620_RS05040 - 1040167..1041183 (+) 1017 Protein_901 IS110 family transposase -
  NM620_RS05045 - 1041612..1042511 (-) 900 WP_256383890.1 lysine exporter LysO family protein -
  NM620_RS05050 - 1042780..1043697 (-) 918 WP_256383891.1 HDOD domain-containing protein -
  NM620_RS05055 - 1043812..1044408 (-) 597 WP_256383892.1 LON peptidase substrate-binding domain-containing protein -
  NM620_RS05060 tfoX 1044681..1045280 (+) 600 WP_256383893.1 TfoX/Sxy family DNA transformation protein Regulator
  NM620_RS05065 dsdC 1045383..1046291 (+) 909 WP_256383894.1 DNA-binding transcriptional regulator DsdC -
  NM620_RS05070 - 1046377..1047369 (-) 993 WP_080173604.1 2-hydroxyacid dehydrogenase -
  NM620_RS05075 - 1047608..1048924 (+) 1317 WP_256383895.1 DUF945 family protein -
  NM620_RS05080 - 1049175..1049591 (+) 417 WP_080173608.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23120.62 Da        Isoelectric Point: 8.7562

>NTDB_id=711581 NM620_RS05060 WP_256383893.1 1044681..1045280(+) (tfoX) [Photobacterium toruni strain WD2103]
MTLIKDDYLNYLAKFGQQEKRSMFGGTGIFINSAMFAIVTPNSMYIRGGDELDEKLIRSGCEKFRHVKKSKTATVNYYEI
NKLFLTDQSQCDLLVKESIAFSCRDKNIKSSAENRRLRDLPNMRLTLERMVKKVGVLDVDTFFNVGAVNIFKRVCEHNGQ
ELDYKLLWIFAGAIQGGHWQLLSEEHKQQLLDEYRQQIY

Nucleotide


Download         Length: 600 bp        

>NTDB_id=711581 NM620_RS05060 WP_256383893.1 1044681..1045280(+) (tfoX) [Photobacterium toruni strain WD2103]
ATGACATTAATAAAAGATGATTATTTGAATTATTTAGCTAAATTTGGTCAGCAAGAAAAACGATCAATGTTTGGTGGTAC
GGGTATTTTTATTAATAGCGCCATGTTTGCAATCGTAACGCCGAATTCAATGTATATTCGCGGAGGGGATGAACTTGATG
AAAAATTAATTCGTTCTGGTTGTGAAAAGTTTAGACATGTAAAAAAGAGTAAAACGGCTACTGTTAATTATTATGAGATT
AATAAACTATTTTTAACCGATCAATCGCAATGTGATTTATTAGTGAAAGAATCAATTGCCTTTTCTTGCCGCGATAAAAA
TATTAAATCTTCTGCTGAAAATCGTCGTTTACGTGATTTACCTAATATGCGTTTAACACTTGAACGTATGGTAAAAAAAG
TCGGAGTATTAGATGTTGATACCTTTTTTAATGTCGGGGCTGTGAATATTTTTAAGCGTGTATGTGAGCATAATGGACAG
GAATTAGATTACAAATTGTTATGGATTTTTGCCGGTGCGATTCAAGGGGGACATTGGCAGTTATTAAGTGAAGAGCATAA
ACAGCAATTATTAGATGAGTATCGCCAACAAATATATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

51.053

95.477

0.487
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

51.053

95.477

0.487
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

51.053

95.477

0.487
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

51.053

95.477

0.487
  tfoX Vibrio cholerae strain A1552

51.053

95.477

0.487
  tfoX Vibrio campbellii strain DS40M4

50.262

95.98

0.482
  tfoX Aliivibrio fischeri ES114

49.741

96.985

0.482
  tfoX Vibrio parahaemolyticus RIMD 2210633

48.168

95.98

0.462