Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NM620_RS01450 Genome accession   NZ_CP101694
Coordinates   292305..292865 (+) Length   186 a.a.
NCBI ID   WP_080174418.1    Uniprot ID   A0A1T4SFE6
Organism   Photobacterium toruni strain WD2103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 290993..291937 292305..292865 flank 368


Gene organization within MGE regions


Location: 290993..292865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM620_RS01445 - 290993..291937 (-) 945 WP_256382793.1 IS1595-like element ISPma1 family transposase -
  NM620_RS01450 ssb 292305..292865 (+) 561 WP_080174418.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20621.69 Da        Isoelectric Point: 5.1976

>NTDB_id=711566 NM620_RS01450 WP_080174418.1 292305..292865(+) (ssb) [Photobacterium toruni strain WD2103]
MASRGVNKVILIGNLGNDPEIRYMPSGGAVANITIATSESWRDKSTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRNGGQGAPMGGQQQQQNQGNWGQPQQPAAAPQQNYAPQQQHQPA
PQQSAPQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=711566 NM620_RS01450 WP_080174418.1 292305..292865(+) (ssb) [Photobacterium toruni strain WD2103]
ATGGCCAGTCGTGGCGTAAATAAAGTTATCTTAATCGGTAACTTGGGAAATGATCCAGAAATTCGTTACATGCCTAGCGG
TGGTGCAGTAGCTAATATTACTATTGCAACCTCTGAATCTTGGCGTGATAAGTCTACCGGTGAGCAACGTGAAAAAACAG
AATGGCACCGTGTAGCATTATTTGGCAAATTAGCAGAAGTCGCTGGTGAATACCTACGTAAAGGATCACAAGTGTACATC
GAAGGCCAATTACAAACCCGTAAATGGCAAAACCAACAAGGCCAAGATCAATACACTACTGAAGTCGTTGTTCAAGGTTT
TAATGGTGTAATGCAAATGTTAGGCGGCCGTAATGGCGGTCAAGGTGCTCCAATGGGTGGCCAGCAACAACAGCAGAATC
AAGGTAATTGGGGTCAGCCTCAACAACCTGCAGCTGCGCCACAACAAAATTATGCACCACAGCAACAACATCAGCCAGCG
CCGCAGCAGTCTGCTCCACAGCAACCGCAGCAGCAATATAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTA
G

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SFE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.128

100

0.78
  ssb Glaesserella parasuis strain SC1401

53.439

100

0.543
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.462
  ssb Neisseria meningitidis MC58

43.784

99.462

0.435