Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J67_RS02910 | Genome accession | NZ_AP018776 |
| Coordinates | 578063..578476 (+) | Length | 137 a.a. |
| NCBI ID | WP_005686898.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain CHBN-III-5 isolate 13H30 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 573063..583476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J67_RS02890 (CHBNIII5_05540) | - | 573551..576145 (-) | 2595 | WP_050822811.1 | penicillin-binding protein 1A | - |
| K6J67_RS02895 (CHBNIII5_05550) | comA | 576244..577041 (+) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| K6J67_RS02900 (CHBNIII5_05560) | comB | 577042..577548 (+) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| K6J67_RS02905 (CHBNIII5_05570) | comC | 577545..578066 (+) | 522 | WP_005686899.1 | competence protein ComC | Machinery gene |
| K6J67_RS02910 (CHBNIII5_05580) | comD | 578063..578476 (+) | 414 | WP_005686898.1 | pilus assembly protein PilP | Machinery gene |
| K6J67_RS02915 (CHBNIII5_05590) | comE | 578486..579823 (+) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| K6J67_RS02920 (CHBNIII5_05600) | - | 579836..580522 (+) | 687 | WP_050822809.1 | ComF family protein | - |
| K6J67_RS02925 (CHBNIII5_05610) | nfuA | 580598..581194 (+) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| K6J67_RS02930 (CHBNIII5_05620) | nudC | 581261..582055 (+) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| K6J67_RS02935 (CHBNIII5_05630) | - | 582091..582681 (+) | 591 | WP_005656455.1 | YjaG family protein | - |
| K6J67_RS02940 (CHBNIII5_05640) | - | 582821..583093 (+) | 273 | WP_014550417.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15677.82 Da Isoelectric Point: 4.5625
>NTDB_id=71142 K6J67_RS02910 WP_005686898.1 578063..578476(+) (comD) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=71142 K6J67_RS02910 WP_005686898.1 578063..578476(+) (comD) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |