Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K6J67_RS02895 Genome accession   NZ_AP018776
Coordinates   576244..577041 (+) Length   265 a.a.
NCBI ID   WP_005686900.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571244..582041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS02875 (CHBNIII5_05510) recR 571413..572015 (-) 603 WP_005626527.1 recombination mediator RecR -
  K6J67_RS02880 (CHBNIII5_05520) - 572148..572477 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J67_RS02885 (CHBNIII5_05530) - 572630..573475 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J67_RS02890 (CHBNIII5_05540) - 573551..576145 (-) 2595 WP_050822811.1 penicillin-binding protein 1A -
  K6J67_RS02895 (CHBNIII5_05550) comA 576244..577041 (+) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  K6J67_RS02900 (CHBNIII5_05560) comB 577042..577548 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  K6J67_RS02905 (CHBNIII5_05570) comC 577545..578066 (+) 522 WP_005686899.1 competence protein ComC Machinery gene
  K6J67_RS02910 (CHBNIII5_05580) comD 578063..578476 (+) 414 WP_005686898.1 pilus assembly protein PilP Machinery gene
  K6J67_RS02915 (CHBNIII5_05590) comE 578486..579823 (+) 1338 WP_005686897.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J67_RS02920 (CHBNIII5_05600) - 579836..580522 (+) 687 WP_050822809.1 ComF family protein -
  K6J67_RS02925 (CHBNIII5_05610) nfuA 580598..581194 (+) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31601.99 Da        Isoelectric Point: 6.2348

>NTDB_id=71139 K6J67_RS02895 WP_005686900.1 576244..577041(+) (comA) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPTHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=71139 K6J67_RS02895 WP_005686900.1 576244..577041(+) (comA) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCACTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment