Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K6J67_RS02905 Genome accession   NZ_AP018776
Coordinates   577545..578066 (+) Length   173 a.a.
NCBI ID   WP_005686899.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 572545..583066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS02885 (CHBNIII5_05530) - 572630..573475 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J67_RS02890 (CHBNIII5_05540) - 573551..576145 (-) 2595 WP_050822811.1 penicillin-binding protein 1A -
  K6J67_RS02895 (CHBNIII5_05550) comA 576244..577041 (+) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  K6J67_RS02900 (CHBNIII5_05560) comB 577042..577548 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  K6J67_RS02905 (CHBNIII5_05570) comC 577545..578066 (+) 522 WP_005686899.1 competence protein ComC Machinery gene
  K6J67_RS02910 (CHBNIII5_05580) comD 578063..578476 (+) 414 WP_005686898.1 pilus assembly protein PilP Machinery gene
  K6J67_RS02915 (CHBNIII5_05590) comE 578486..579823 (+) 1338 WP_005686897.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J67_RS02920 (CHBNIII5_05600) - 579836..580522 (+) 687 WP_050822809.1 ComF family protein -
  K6J67_RS02925 (CHBNIII5_05610) nfuA 580598..581194 (+) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -
  K6J67_RS02930 (CHBNIII5_05620) nudC 581261..582055 (+) 795 WP_014550416.1 NAD(+) diphosphatase -
  K6J67_RS02935 (CHBNIII5_05630) - 582091..582681 (+) 591 WP_005656455.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20076.23 Da        Isoelectric Point: 9.6750

>NTDB_id=71141 K6J67_RS02905 WP_005686899.1 577545..578066(+) (comC) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEASTRFDETEYELAKKSSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLATRYGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDNPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=71141 K6J67_RS02905 WP_005686899.1 577545..578066(+) (comC) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGAAAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGCCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATAGAGGCTAGTACGCGTTTTGATGAAACTGAGT
ATGAATTAGCTAAAAAAAGTTCGGAATTGTTGCATCAACAGAAAATTTTAACTTCTCTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTACACGCTACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCAGAAGACAACCCATTG
CAAACCGAAATCATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

94.798

100

0.948
  comC Haemophilus influenzae Rd KW20

93.064

100

0.931

Multiple sequence alignment