Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   POF63_RS01925 Genome accession   NZ_CP116708
Coordinates   333356..334021 (+) Length   221 a.a.
NCBI ID   WP_000128288.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328356..339021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS01900 (POF63_01900) - 328374..329042 (+) 669 WP_000394891.1 fructose-6-phosphate aldolase -
  POF63_RS01905 (POF63_01905) - 329110..330198 (+) 1089 WP_000862118.1 glycerol dehydrogenase -
  POF63_RS01910 (POF63_01910) cysK 330350..331276 (-) 927 WP_000036948.1 cysteine synthase A -
  POF63_RS01915 (POF63_01915) - 331367..332011 (-) 645 WP_001108150.1 YigZ family protein -
  POF63_RS01920 (POF63_01920) comFA/cflA 332067..333356 (+) 1290 WP_000432962.1 DEAD/DEAH box helicase Machinery gene
  POF63_RS01925 (POF63_01925) comFC/cflB 333356..334021 (+) 666 WP_000128288.1 ComF family protein Machinery gene
  POF63_RS01930 (POF63_01930) raiA 334098..334652 (+) 555 WP_000599096.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25442.64 Da        Isoelectric Point: 9.3073

>NTDB_id=711226 POF63_RS01925 WP_000128288.1 333356..334021(+) (comFC/cflB) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MTCLLCHEIDLSQLTFVELILLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKKYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELGDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=711226 POF63_RS01925 WP_000128288.1 333356..334021(+) (comFC/cflB) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
ATGACTTGTTTGTTATGTCATGAAATAGATTTGTCGCAATTAACTTTTGTGGAACTTATACTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAAGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTACAAAAATATTCTTTCTAAAAAAGATGGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAGGGGACAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae Rx1

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae D39

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae R6

42.534

100

0.425
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416