Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NN994_RS06635 Genome accession   NZ_CP101646
Coordinates   1273637..1274566 (-) Length   309 a.a.
NCBI ID   WP_064355555.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain UCCSt95     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268637..1279566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN994_RS06610 (NN994_06615) - 1269923..1270738 (-) 816 WP_024010001.1 Cof-type HAD-IIB family hydrolase -
  NN994_RS06615 (NN994_06620) - 1270731..1271525 (-) 795 WP_064355552.1 HAD-IIB family hydrolase -
  NN994_RS06620 (NN994_06625) - 1271710..1272087 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  NN994_RS06625 (NN994_06630) - 1272092..1272790 (+) 699 WP_064355553.1 ABC transporter ATP-binding protein -
  NN994_RS06630 (NN994_06635) - 1272802..1273587 (+) 786 WP_011681414.1 hypothetical protein -
  NN994_RS06635 (NN994_06640) amiF 1273637..1274566 (-) 930 WP_064355555.1 ATP-binding cassette domain-containing protein Regulator
  NN994_RS06640 (NN994_06645) amiE 1274559..1275644 (-) 1086 WP_064355558.1 ABC transporter ATP-binding protein Regulator
  NN994_RS06645 (NN994_06650) amiD 1275654..1276580 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  NN994_RS06650 (NN994_06655) amiC 1276580..1278073 (-) 1494 WP_064355564.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35175.27 Da        Isoelectric Point: 6.5989

>NTDB_id=711223 NN994_RS06635 WP_064355555.1 1273637..1274566(-) (amiF) [Streptococcus thermophilus strain UCCSt95]
MTEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=711223 NN994_RS06635 WP_064355555.1 1273637..1274566(-) (amiF) [Streptococcus thermophilus strain UCCSt95]
ATGACTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977