Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NON14_RS08995 Genome accession   NZ_CP101642
Coordinates   1774036..1774464 (-) Length   142 a.a.
NCBI ID   WP_148664867.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1769036..1779464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS08985 (NON14_08960) secA 1770752..1773115 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  NON14_RS08990 (NON14_08965) hpf 1773364..1773909 (-) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NON14_RS08995 (NON14_08970) comFC 1774036..1774464 (-) 429 WP_148664867.1 ComF family protein Machinery gene
  NON14_RS09000 (NON14_08975) comFA 1774707..1776044 (-) 1338 WP_409043417.1 DEAD/DEAH box helicase Machinery gene
  NON14_RS09005 (NON14_08980) - 1776106..1776771 (+) 666 WP_056948841.1 YigZ family protein -
  NON14_RS09010 (NON14_08985) - 1776797..1777885 (-) 1089 WP_056948881.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16670.11 Da        Isoelectric Point: 9.8198

>NTDB_id=711150 NON14_RS08995 WP_148664867.1 1774036..1774464(-) (comFC) [Latilactobacillus sakei strain HRB10]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKPNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELIPQELPYKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=711150 NON14_RS08995 WP_148664867.1 1774036..1774464(-) (comFC) [Latilactobacillus sakei strain HRB10]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTGTTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAACCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCACAATTTTTTGAATTAATACCGCAAGAATTACCGTATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comFC Lactococcus lactis subsp. cremoris KW2

37.241

100

0.38