Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NON14_RS09000 Genome accession   NZ_CP101642
Coordinates   1774707..1776044 (-) Length   445 a.a.
NCBI ID   WP_409043417.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1769707..1781044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS08985 (NON14_08960) secA 1770752..1773115 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  NON14_RS08990 (NON14_08965) hpf 1773364..1773909 (-) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NON14_RS08995 (NON14_08970) comFC 1774036..1774464 (-) 429 WP_148664867.1 ComF family protein Machinery gene
  NON14_RS09000 (NON14_08975) comFA 1774707..1776044 (-) 1338 WP_409043417.1 DEAD/DEAH box helicase Machinery gene
  NON14_RS09005 (NON14_08980) - 1776106..1776771 (+) 666 WP_056948841.1 YigZ family protein -
  NON14_RS09010 (NON14_08985) - 1776797..1777885 (-) 1089 WP_056948881.1 glycosyltransferase family 4 protein -
  NON14_RS09015 (NON14_08990) rny 1778038..1779603 (-) 1566 WP_409043420.1 ribonuclease Y -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 50243.72 Da        Isoelectric Point: 9.7545

>NTDB_id=711151 NON14_RS09000 WP_409043417.1 1774707..1776044(-) (comFA) [Latilactobacillus sakei strain HRB10]
MGQPVIACGRQFTAAQLADTQNNNYSLPQIERRPAFLRVKQRLICQRCQQVVPSQTCLPDGRHYCAQCLLFGRLVEGDWL
YTIPEDHLFKTATPKLTWAGQLTVYQEQAAQAVVAVIQAHKWHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYQRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTLAIKRAIAAKQMTVSELPLRFHGGILPEPQRHVAFNWRPRLKKGRLPKRLEHDCQICLKNQQILLFVPQVR
LLKPVANRLSILLPAVRIETVHANDPEQIEKIAAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYAQNPVHFYYQDYTRAIKGACRQIKTQNQRGRRLQSTV

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=711151 NON14_RS09000 WP_409043417.1 1774707..1776044(-) (comFA) [Latilactobacillus sakei strain HRB10]
ATGGGACAACCAGTGATTGCCTGTGGCCGCCAGTTTACTGCGGCCCAGTTAGCCGATACGCAAAATAATAATTATAGTTT
ACCACAGATTGAGCGCCGACCCGCGTTTTTACGGGTCAAGCAACGTTTAATCTGCCAACGTTGTCAGCAAGTGGTACCGT
CGCAAACTTGCTTACCAGACGGCCGTCATTATTGCGCGCAGTGTTTGTTATTTGGTCGTTTAGTAGAAGGGGATTGGTTA
TATACAATCCCTGAGGATCATTTATTTAAAACCGCTACACCGAAGTTGACGTGGGCAGGCCAATTAACAGTGTATCAGGA
ACAAGCCGCCCAAGCGGTGGTAGCGGTTATTCAAGCCCATAAATGGCACGTATTAACAGCCGTGACCGGTGCCGGGAAGA
CCGAGATGCTTTTTCAAGGGATTCTAGTCGCACTACAAAAGGGACAGCGAGTGTGTTTGGCAGCACCTAGAGTCGCAGTT
TGTCTAGAACTGTATCAGCGGCTTCAAGCCGCCTTTGCGACGACTAGTATCATGTTGATGCATGGCGAGCAAACCGAGCC
CTATCGCTATACCCAGTTAGTGATTTGCACGACACATCAATTACTGAAGTTTTATCACGCTTTTGATACGGTCATCGTTG
ATGAAGTGGATGCTTTTCCTTTTGTTGATAATCCAGTTTTAGCCACGGCAGTTGAACAAGCCTGTAAGCCTCAGTGTGCG
TTATTATATTTAACGGCTACGCCGACACTAGCCATCAAGCGGGCGATTGCTGCTAAACAAATGACAGTTAGTGAATTACC
GCTTCGCTTTCATGGGGGAATATTGCCAGAACCGCAACGGCATGTCGCTTTCAATTGGCGGCCGCGATTAAAGAAGGGCC
GGTTACCTAAACGACTTGAGCATGATTGCCAGATTTGTTTAAAAAACCAGCAGATTTTGCTATTTGTACCGCAAGTCAGA
TTATTAAAACCAGTTGCCAATCGACTATCAATTTTATTACCGGCGGTCAGAATTGAGACGGTGCACGCAAACGATCCTGA
ACAAATTGAAAAGATCGCGGCGTTTAGGGCTCAACAAATTCAATTAATGGTGACGACCACTATTTTGGAGCGGGGCGTTA
CGTTTAAAAACGTTGCAGTTTTGGTCTTAGGCGCGGAACATATGGTGTTTAACGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCGGGACGGCATAAAGATTACGCACAAAATCCGGTTCATTTTTATTATCAAGACTATACGCGGGCGATCAAAGGCGC
TTGTCGGCAAATTAAGACCCAAAATCAGAGGGGACGGCGATTACAATCAACTGTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(307-405)

Type III restriction enzyme, res subunit (ResIII)

(102-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

91.91

100

0.919
  comFA/cflA Streptococcus pneumoniae TIGR4

38.979

96.854

0.378
  comFA/cflA Streptococcus pneumoniae Rx1

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae D39

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae R6

38.747

96.854

0.375
  comFA/cflA Streptococcus mitis NCTC 12261

38.515

96.854

0.373
  comFA/cflA Streptococcus mitis SK321

38.372

96.629

0.371