Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NON14_RS05940 Genome accession   NZ_CP101642
Coordinates   1182049..1182756 (+) Length   235 a.a.
NCBI ID   WP_231952379.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1177049..1187756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS05910 (NON14_05895) - 1177269..1178447 (+) 1179 WP_409042999.1 FtsW/RodA/SpoVE family cell cycle protein -
  NON14_RS05915 (NON14_05900) - 1178458..1179546 (+) 1089 WP_409043001.1 CAP-associated domain-containing protein -
  NON14_RS05920 (NON14_05905) - 1179570..1179860 (+) 291 WP_011374775.1 YlbG family protein -
  NON14_RS05925 (NON14_05910) rsmD 1179865..1180419 (+) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NON14_RS05930 (NON14_05915) coaD 1180432..1180929 (+) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  NON14_RS05935 (NON14_05920) - 1180931..1181977 (+) 1047 WP_011374772.1 SepM family pheromone-processing serine protease -
  NON14_RS05940 (NON14_05925) comEA 1182049..1182756 (+) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  NON14_RS05945 (NON14_05930) - 1182814..1183302 (+) 489 WP_011374770.1 ComE operon protein 2 -
  NON14_RS05950 (NON14_05935) comEC 1183395..1185566 (+) 2172 WP_231953420.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NON14_RS05955 (NON14_05940) holA 1185563..1186591 (+) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  NON14_RS05960 (NON14_05945) rpsT 1186660..1186914 (-) 255 WP_011374767.1 30S ribosomal protein S20 -
  NON14_RS05965 (NON14_05950) rpsO 1187193..1187462 (+) 270 WP_011374766.1 30S ribosomal protein S15 -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26146.73 Da        Isoelectric Point: 9.7682

>NTDB_id=711141 NON14_RS05940 WP_231952379.1 1182049..1182756(+) (comEA) [Latilactobacillus sakei strain HRB10]
MMWQDYWQRYRRFWWVPCLVLLGIIAGGFYWHQSQQKQKVTQNEQLLATSASKTKPATKKTHQAATKKKGGFVDIKGAVV
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTQEQASTG
TSANASSTSDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=711141 NON14_RS05940 WP_231952379.1 1182049..1182756(+) (comEA) [Latilactobacillus sakei strain HRB10]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCGCGGG
TGGCTTTTATTGGCATCAATCGCAACAAAAACAAAAAGTAACGCAAAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
CAAAACCCGCTACTAAGAAGACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGCGCGGTGGTC
TACCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGCTCAAAAGTTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATCGCAACGACCAGTGAGCGTACGCAAGAACAGGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCACGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comEA Lactococcus lactis subsp. cremoris KW2

36.797

98.298

0.362