Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J70_RS08720 Genome accession   NZ_AP018774
Coordinates   1794545..1794892 (-) Length   115 a.a.
NCBI ID   WP_005686287.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-3 isolate 13H42     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789545..1799892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J70_RS08700 (CHBNIII3_16590) bioB 1789934..1790935 (-) 1002 WP_005655985.1 biotin synthase BioB -
  K6J70_RS08705 (CHBNIII3_16600) thiQ 1791048..1791695 (-) 648 WP_005647864.1 thiamine ABC transporter ATP-binding protein -
  K6J70_RS08710 (CHBNIII3_16610) thiP 1791679..1793295 (-) 1617 WP_012054528.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  K6J70_RS08715 (CHBNIII3_16620) thiB 1793300..1794298 (-) 999 WP_005686289.1 thiamine ABC transporter substrate binding subunit -
  K6J70_RS08720 (CHBNIII3_16630) comE1/comEA 1794545..1794892 (-) 348 WP_005686287.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J70_RS08725 (CHBNIII3_16640) ispH 1795061..1796005 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J70_RS08730 (CHBNIII3_16650) lspA 1796002..1796517 (-) 516 WP_005664259.1 signal peptidase II -
  K6J70_RS08735 (CHBNIII3_16660) - 1796587..1798146 (-) 1560 WP_032821555.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12363.23 Da        Isoelectric Point: 8.0085

>NTDB_id=71087 K6J70_RS08720 WP_005686287.1 1794545..1794892(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MKLMKTLFTSVVLCGVLVVSSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71087 K6J70_RS08720 WP_005686287.1 1794545..1794892(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGTGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baumannii strain A118

32.824

100

0.374

Multiple sequence alignment