Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NNQ28_RS19090 Genome accession   NZ_CP101599
Coordinates   3974252..3974794 (-) Length   180 a.a.
NCBI ID   WP_007675594.1    Uniprot ID   K8ABX4
Organism   Cronobacter dublinensis strain CFSA A137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3969252..3979794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNQ28_RS19070 (NNQ28_19085) - 3969540..3971147 (-) 1608 WP_316351735.1 EAL domain-containing protein -
  NNQ28_RS19075 (NNQ28_19090) - 3971735..3972013 (+) 279 WP_007712039.1 YjcB family protein -
  NNQ28_RS19080 (NNQ28_19095) - 3972071..3972415 (-) 345 WP_316351736.1 hypothetical protein -
  NNQ28_RS19085 (NNQ28_19100) - 3972591..3973637 (-) 1047 WP_105666626.1 GGDEF domain-containing protein -
  NNQ28_RS19090 (NNQ28_19105) ssb 3974252..3974794 (-) 543 WP_007675594.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NNQ28_RS19095 (NNQ28_19110) uvrA 3975025..3977850 (+) 2826 WP_007752786.1 excinuclease ABC subunit UvrA -
  NNQ28_RS19100 (NNQ28_19115) - 3978006..3978452 (+) 447 WP_394805302.1 hypothetical protein -
  NNQ28_RS19105 (NNQ28_19120) - 3978465..3978809 (+) 345 WP_316351738.1 hypothetical protein -
  NNQ28_RS19110 (NNQ28_19125) - 3978838..3979794 (-) 957 WP_316351739.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19321.36 Da        Isoelectric Point: 5.2358

>NTDB_id=710755 NNQ28_RS19090 WP_007675594.1 3974252..3974794(-) (ssb) [Cronobacter dublinensis strain CFSA A137]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQSGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=710755 NNQ28_RS19090 WP_007675594.1 3974252..3974794(-) (ssb) [Cronobacter dublinensis strain CFSA A137]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTAACCG
AATGGCACAGCGTGGTGCTATACGGCAAGCTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCGCAGATCTACATC
GAAGGTCAGCTGCGCACCCGTAAGTGGCAGGACCAGAGCGGTCAGGATCGCTACTCTACCGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCAATATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGCAGCAGAGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGCCCGCAG
CAGCAGGCACCGGCGCCTTCCAATGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8ABX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.756
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.594
  ssb Neisseria meningitidis MC58

48.087

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.087

100

0.489