Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMY27_RS18690 Genome accession   NZ_CP101591
Coordinates   3897897..3898439 (-) Length   180 a.a.
NCBI ID   WP_007702264.1    Uniprot ID   -
Organism   Cronobacter dublinensis strain CFSA A14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3892897..3903439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMY27_RS18670 (NMY27_18650) - 3893185..3894792 (-) 1608 WP_158695230.1 EAL domain-containing protein -
  NMY27_RS18675 (NMY27_18655) - 3895380..3895658 (+) 279 WP_007712039.1 YjcB family protein -
  NMY27_RS18680 (NMY27_18660) - 3895716..3896060 (-) 345 WP_275876122.1 hypothetical protein -
  NMY27_RS18685 (NMY27_18665) - 3896236..3897282 (-) 1047 WP_105631061.1 GGDEF domain-containing protein -
  NMY27_RS18690 (NMY27_18670) ssb 3897897..3898439 (-) 543 WP_007702264.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMY27_RS18695 (NMY27_18675) uvrA 3898670..3901495 (+) 2826 WP_007752786.1 excinuclease ABC subunit UvrA -
  NMY27_RS18700 (NMY27_18680) - 3901585..3902097 (+) 513 WP_338157567.1 hypothetical protein -
  NMY27_RS18705 (NMY27_18685) - 3902110..3902454 (+) 345 WP_275876124.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19291.33 Da        Isoelectric Point: 5.2358

>NTDB_id=710714 NMY27_RS18690 WP_007702264.1 3897897..3898439(-) (ssb) [Cronobacter dublinensis strain CFSA A14]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=710714 NMY27_RS18690 WP_007702264.1 3897897..3898439(-) (ssb) [Cronobacter dublinensis strain CFSA A14]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTAACCG
AATGGCACAGCGTGGTGCTGTACGGCAAGCTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCGCAGATCTACATC
GAAGGTCAGCTGCGCACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCTCCGGCAGGCGGCAACATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGCCCGCAG
CAGCAGGCACCGGCGCCTTCCAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.756
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.594
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.483
  ssb Neisseria meningitidis MC58

45.109

100

0.461