Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J70_RS02895 | Genome accession | NZ_AP018774 |
| Coordinates | 577595..578008 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain CHBN-III-3 isolate 13H42 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 572595..583008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J70_RS02875 (CHBNIII3_05510) | - | 573077..575677 (-) | 2601 | WP_011961683.1 | penicillin-binding protein 1A | - |
| K6J70_RS02880 (CHBNIII3_05520) | comA | 575776..576573 (+) | 798 | WP_011961684.1 | pilus assembly protein PilM | Machinery gene |
| K6J70_RS02885 (CHBNIII3_05530) | comB | 576574..577080 (+) | 507 | WP_011961685.1 | hypothetical protein | Machinery gene |
| K6J70_RS02890 (CHBNIII3_05540) | comC | 577077..577598 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J70_RS02895 (CHBNIII3_05550) | comD | 577595..578008 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J70_RS02900 (CHBNIII3_05560) | comE | 578018..579355 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J70_RS02905 (CHBNIII3_05570) | - | 579368..580054 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J70_RS02910 (CHBNIII3_05580) | nfuA | 580130..580726 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J70_RS02915 (CHBNIII3_05590) | nudC | 580793..581587 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| K6J70_RS02920 (CHBNIII3_05600) | - | 581623..582213 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| K6J70_RS02925 (CHBNIII3_05610) | - | 582353..582625 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=71071 K6J70_RS02895 WP_011272047.1 577595..578008(+) (comD) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=71071 K6J70_RS02895 WP_011272047.1 577595..578008(+) (comD) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |