Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K6J70_RS02880 Genome accession   NZ_AP018774
Coordinates   575776..576573 (+) Length   265 a.a.
NCBI ID   WP_011961684.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-3 isolate 13H42     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570776..581573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J70_RS02860 (CHBNIII3_05480) recR 571017..571619 (-) 603 WP_005626527.1 recombination mediator RecR -
  K6J70_RS02865 (CHBNIII3_05490) - 571677..572006 (-) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  K6J70_RS02870 (CHBNIII3_05500) - 572159..573004 (-) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J70_RS02875 (CHBNIII3_05510) - 573077..575677 (-) 2601 WP_011961683.1 penicillin-binding protein 1A -
  K6J70_RS02880 (CHBNIII3_05520) comA 575776..576573 (+) 798 WP_011961684.1 pilus assembly protein PilM Machinery gene
  K6J70_RS02885 (CHBNIII3_05530) comB 576574..577080 (+) 507 WP_011961685.1 hypothetical protein Machinery gene
  K6J70_RS02890 (CHBNIII3_05540) comC 577077..577598 (+) 522 WP_011272048.1 competence protein ComC Machinery gene
  K6J70_RS02895 (CHBNIII3_05550) comD 577595..578008 (+) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  K6J70_RS02900 (CHBNIII3_05560) comE 578018..579355 (+) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  K6J70_RS02905 (CHBNIII3_05570) - 579368..580054 (+) 687 WP_011272045.1 ComF family protein -
  K6J70_RS02910 (CHBNIII3_05580) nfuA 580130..580726 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31420.75 Da        Isoelectric Point: 5.6720

>NTDB_id=71068 K6J70_RS02880 WP_011961684.1 575776..576573(+) (comA) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MQFSLKNYLTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPISLDELWFDYRSTPLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERAQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLSENWQRV
ETELPFIALGNALWKKDLYQQKVSS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=71068 K6J70_RS02880 WP_011961684.1 575776..576573(+) (comA) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGCAATTCTCCCTGAAAAATTACCTCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCGCAAGTATTAAATGCGCAAGAATGCCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AGATGAATTATGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAACGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGGGCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAGCAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACGCCATTATCAGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTGGGCAACGCGCTATGGAAAAAAGATTTATATCAACAAAAAGTGAGTAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966
  comA Haemophilus influenzae Rd KW20

93.962

100

0.94

Multiple sequence alignment