Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   K6J70_RS02885 Genome accession   NZ_AP018774
Coordinates   576574..577080 (+) Length   168 a.a.
NCBI ID   WP_011961685.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-3 isolate 13H42     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571574..582080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J70_RS02865 (CHBNIII3_05490) - 571677..572006 (-) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  K6J70_RS02870 (CHBNIII3_05500) - 572159..573004 (-) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J70_RS02875 (CHBNIII3_05510) - 573077..575677 (-) 2601 WP_011961683.1 penicillin-binding protein 1A -
  K6J70_RS02880 (CHBNIII3_05520) comA 575776..576573 (+) 798 WP_011961684.1 pilus assembly protein PilM Machinery gene
  K6J70_RS02885 (CHBNIII3_05530) comB 576574..577080 (+) 507 WP_011961685.1 hypothetical protein Machinery gene
  K6J70_RS02890 (CHBNIII3_05540) comC 577077..577598 (+) 522 WP_011272048.1 competence protein ComC Machinery gene
  K6J70_RS02895 (CHBNIII3_05550) comD 577595..578008 (+) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  K6J70_RS02900 (CHBNIII3_05560) comE 578018..579355 (+) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  K6J70_RS02905 (CHBNIII3_05570) - 579368..580054 (+) 687 WP_011272045.1 ComF family protein -
  K6J70_RS02910 (CHBNIII3_05580) nfuA 580130..580726 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  K6J70_RS02915 (CHBNIII3_05590) nudC 580793..581587 (+) 795 WP_005686893.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19659.41 Da        Isoelectric Point: 6.8827

>NTDB_id=71069 K6J70_RS02885 WP_011961685.1 576574..577080(+) (comB) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLTLAFSNLIEQQKQNLQAQQTSFEQLNQQLYKTAKQIEQLRSAVQVG
EILTSIPNEQVKKSLQLLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=71069 K6J70_RS02885 WP_011961685.1 576574..577080(+) (comB) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACTTTGGCTTTTAGTAATTTAATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAGCAACTTAATCAGCAACTTTATAAAACAGCCAAGCAAATTGAACAGTTGCGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAACGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

94.643

100

0.946
  comB Haemophilus influenzae Rd KW20

93.452

100

0.935

Multiple sequence alignment