Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NNL25_RS24015 | Genome accession | NZ_CP101540 |
| Coordinates | 5159019..5159891 (+) | Length | 290 a.a. |
| NCBI ID | WP_003125204.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain D-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5154019..5164891
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NNL25_RS23990 (NNL25_23960) | nadC | 5154374..5155222 (+) | 849 | WP_255866345.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| NNL25_RS24000 (NNL25_23970) | pilA | 5155410..5155862 (-) | 453 | WP_024947914.1 | pilin | Machinery gene |
| NNL25_RS24005 (NNL25_23975) | pilB | 5156091..5157791 (+) | 1701 | WP_009875880.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NNL25_RS24010 (NNL25_23980) | pilC | 5157795..5159015 (+) | 1221 | WP_016253888.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| NNL25_RS24015 (NNL25_23985) | pilD | 5159019..5159891 (+) | 873 | WP_003125204.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| NNL25_RS24020 (NNL25_23990) | coaE | 5159888..5160499 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| NNL25_RS24025 (NNL25_23995) | yacG | 5160496..5160696 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| NNL25_RS24030 (NNL25_24000) | - | 5160733..5160942 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| NNL25_RS24035 (NNL25_24005) | - | 5161048..5161737 (-) | 690 | WP_023119820.1 | energy-coupling factor ABC transporter permease | - |
| NNL25_RS24040 (NNL25_24010) | - | 5161734..5162204 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| NNL25_RS24045 (NNL25_24015) | - | 5162201..5162626 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| NNL25_RS24050 (NNL25_24020) | - | 5162759..5163388 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| NNL25_RS24055 (NNL25_24025) | - | 5163385..5163834 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| NNL25_RS24060 (NNL25_24030) | - | 5163860..5164030 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31839.89 Da Isoelectric Point: 7.7068
>NTDB_id=710544 NNL25_RS24015 WP_003125204.1 5159019..5159891(+) (pilD) [Pseudomonas aeruginosa strain D-2]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=710544 NNL25_RS24015 WP_003125204.1 5159019..5159891(+) (pilD) [Pseudomonas aeruginosa strain D-2]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTACTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGAGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTACTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGAGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |