Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IF662_RS16200 Genome accession   NZ_AP023427
Coordinates   3380119..3380724 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain HUE1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3375119..3385724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF662_RS16180 (RVB1_31830) aes 3375156..3376115 (+) 960 WP_063501955.1 acetyl esterase -
  IF662_RS16185 (RVB1_31840) hemH 3376112..3377074 (-) 963 WP_001250088.1 ferrochelatase -
  IF662_RS16190 (RVB1_31850) adk 3377310..3377954 (-) 645 WP_001220233.1 adenylate kinase -
  IF662_RS16195 (RVB1_31860) htpG 3378135..3380009 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  IF662_RS16200 (RVB1_31870) recR 3380119..3380724 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  IF662_RS16205 (RVB1_31880) ybaB 3380724..3381053 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  IF662_RS16210 (RVB1_31890) dnaX 3381106..3383037 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  IF662_RS16215 (RVB1_31900) apt 3383166..3383717 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  IF662_RS16220 (RVB1_31910) ybaN 3383870..3384247 (-) 378 WP_001188905.1 DUF454 family protein -
  IF662_RS16225 (RVB1_31920) priC 3384317..3384844 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  IF662_RS16230 (RVB1_31930) rsmS 3384858..3385019 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=71052 IF662_RS16200 WP_001195025.1 3380119..3380724(-) (recR) [Escherichia coli strain HUE1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=71052 IF662_RS16200 WP_001195025.1 3380119..3380724(-) (recR) [Escherichia coli strain HUE1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCACAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment