Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J68_RS09445 Genome accession   NZ_AP018773
Coordinates   1898644..1898991 (-) Length   115 a.a.
NCBI ID   WP_005686287.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-2 isolate 13H39     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893644..1903991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J68_RS09425 (CHBNIII2_18040) bioB 1894033..1895034 (-) 1002 WP_005655985.1 biotin synthase BioB -
  K6J68_RS09430 (CHBNIII2_18050) thiQ 1895147..1895794 (-) 648 WP_005655984.1 thiamine ABC transporter ATP-binding protein -
  K6J68_RS09435 (CHBNIII2_18060) thiP 1895778..1897394 (-) 1617 WP_012054528.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  K6J68_RS09440 (CHBNIII2_18070) thiB 1897399..1898397 (-) 999 WP_005686289.1 thiamine ABC transporter substrate binding subunit -
  K6J68_RS09445 (CHBNIII2_18080) comE1/comEA 1898644..1898991 (-) 348 WP_005686287.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J68_RS09450 (CHBNIII2_18090) ispH 1899160..1900104 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J68_RS09455 (CHBNIII2_18100) lspA 1900101..1900616 (-) 516 WP_005664259.1 signal peptidase II -
  K6J68_RS09460 (CHBNIII2_18110) - 1900686..1902245 (-) 1560 WP_032821555.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12363.23 Da        Isoelectric Point: 8.0085

>NTDB_id=71051 K6J68_RS09445 WP_005686287.1 1898644..1898991(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
MKLMKTLFTSVVLCGVLVVSSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71051 K6J68_RS09445 WP_005686287.1 1898644..1898991(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGTGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baumannii strain A118

32.824

100

0.374

Multiple sequence alignment