Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NMB96_RS23210 Genome accession   NZ_CP101417
Coordinates   5416334..5417782 (+) Length   482 a.a.
NCBI ID   WP_181018098.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain jj2001     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5411334..5422782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS23195 (NMB96_23170) sucD 5412334..5413209 (-) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -
  NMB96_RS23200 (NMB96_23175) sucC 5413234..5414403 (-) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  NMB96_RS23205 (NMB96_23180) - 5414636..5416249 (+) 1614 WP_043889861.1 HAMP domain-containing sensor histidine kinase -
  NMB96_RS23210 (NMB96_23185) pilR 5416334..5417782 (+) 1449 WP_181018098.1 sigma-54 dependent transcriptional regulator Regulator
  NMB96_RS23215 (NMB96_23190) - 5417856..5418038 (+) 183 WP_074066024.1 YhfG family protein -
  NMB96_RS23220 (NMB96_23195) - 5418035..5418652 (+) 618 WP_255085842.1 Fic family protein -
  NMB96_RS23225 (NMB96_23200) pilB 5418661..5420397 (-) 1737 WP_023904907.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NMB96_RS23230 (NMB96_23205) pilA2 5420650..5421075 (-) 426 WP_023904908.1 pilin Machinery gene
  NMB96_RS23235 (NMB96_23210) pilC 5421428..5422687 (+) 1260 WP_023904909.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 52295.90 Da        Isoelectric Point: 6.5126

>NTDB_id=710105 NMB96_RS23210 WP_181018098.1 5416334..5417782(+) (pilR) [Xanthomonas hortorum strain jj2001]
MGPNPDDNCRPSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPEQASRLL
GDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAH
ADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRI
NVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDL
RLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLG
ME

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=710105 NMB96_RS23210 WP_181018098.1 5416334..5417782(+) (pilR) [Xanthomonas hortorum strain jj2001]
GTGGGCCCAAACCCCGACGACAATTGTCGTCCGTCATCGCGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACCG
CCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTGTGCCTGACCGACATGCGCCTGCCCGAT
GGCAACGGCATCGAACTGGTCACCGAAATCTCCAAGCAGTATCCGCAGACCCCGGTGGCGATGATTACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCGGAACAGGCCAGCCGCCTACTC
GGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTTTACATCGTCGG
CGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCAGCCGGCCCGTTCGTGCCGG
TGAACTGCGGCGCCATTCCCGCCGAATTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCGCAT
GCCGACAAGCCTGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGCTGCAGAT
GCAGGTCAAACTACTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGCCTCTACCGAATCGCTGGTGGACGTGC
GCATTCTCTCGGCCACCCACAAGGACCTCGGTGACCTGGTCTCCGACGGCCGTTTCCGCCACGACTTGTACTACCGCATC
AACGTGATCGAACTGCGCGTCCCGCCCCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATTATCGCGCG
CCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCACTCGACGCGCTGGACACATACGGTTTTCCCG
GCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCAGCGATCTG
CGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGTGGTCGA
CATCGACCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGCCGCGATCCAGAAAGCGCTGGAAGAAA
ACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGGGCGCTGCGCTACAAGCTCAAGAAGTTGGGG
ATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(439-479)

Sigma-54 interaction domain (Sigma54_activat)

(160-325)

Response regulator receiver domain (Response_reg)

(28-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.557

95.643

0.608
  pilR Acinetobacter baumannii strain A118

49.353

96.266

0.475