Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMB96_RS21640 Genome accession   NZ_CP101417
Coordinates   5029992..5030519 (-) Length   175 a.a.
NCBI ID   WP_255085678.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain jj2001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5024992..5035519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS21630 (NMB96_21610) - 5025932..5027401 (-) 1470 WP_255085676.1 hypothetical protein -
  NMB96_RS21635 (NMB96_21615) - 5027485..5029683 (-) 2199 WP_255085677.1 TonB-dependent siderophore receptor -
  NMB96_RS21640 (NMB96_21620) ssb 5029992..5030519 (-) 528 WP_255085678.1 single-stranded DNA-binding protein Machinery gene
  NMB96_RS21645 (NMB96_21625) - 5030793..5031791 (+) 999 WP_043889330.1 polyprenyl synthetase family protein -
  NMB96_RS21650 (NMB96_21630) murD 5031994..5033403 (-) 1410 WP_255085679.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  NMB96_RS21655 (NMB96_21635) murL 5033384..5034739 (-) 1356 WP_255085681.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  NMB96_RS21660 (NMB96_21640) - 5034736..5035194 (-) 459 WP_255085682.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18904.79 Da        Isoelectric Point: 5.3177

>NTDB_id=710100 NMB96_RS21640 WP_255085678.1 5029992..5030519(-) (ssb) [Xanthomonas hortorum strain jj2001]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMSGDRPQRTQAPRQQQGGGGGGGQGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=710100 NMB96_RS21640 WP_255085678.1 5029992..5030519(-) (ssb) [Xanthomonas hortorum strain jj2001]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
GAGTTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAAATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGTGGCATGAGCGGCGATCGCCCGCAGCGCACGCAGGCGCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGCGGTCAGGGCGGCGGTCAGGATTATGCCCCGCGTCGTCAGCAGCCGGCCCAGCAGCAG
TCCGCGCCGCCGATGGACGACTTTGCGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.491
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.48
  ssb Neisseria meningitidis MC58

46.067

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.469