Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMB96_RS00605 Genome accession   NZ_CP101417
Coordinates   143556..144614 (-) Length   352 a.a.
NCBI ID   WP_043888921.1    Uniprot ID   A0A6V7CFQ6
Organism   Xanthomonas hortorum strain jj2001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138556..149614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS00585 (NMB96_00585) - 139700..141577 (-) 1878 WP_043888922.1 type IV pilus secretin PilQ family protein -
  NMB96_RS00590 (NMB96_00590) - 141597..142130 (-) 534 WP_023902582.1 pilus assembly protein PilP -
  NMB96_RS00595 (NMB96_00595) - 142127..142792 (-) 666 WP_006451354.1 type 4a pilus biogenesis protein PilO -
  NMB96_RS00600 (NMB96_00600) - 142789..143556 (-) 768 WP_023902581.1 PilN domain-containing protein -
  NMB96_RS00605 (NMB96_00605) comM 143556..144614 (-) 1059 WP_043888921.1 pilus assembly protein PilM Machinery gene
  NMB96_RS00610 (NMB96_00610) - 144830..147256 (+) 2427 WP_074058177.1 penicillin-binding protein 1A -
  NMB96_RS00615 (NMB96_00615) - 147464..148114 (+) 651 WP_023902578.1 hypothetical protein -
  NMB96_RS00620 (NMB96_00620) - 148218..149507 (-) 1290 WP_023902577.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37652.26 Da        Isoelectric Point: 4.3882

>NTDB_id=710090 NMB96_RS00605 WP_043888921.1 143556..144614(-) (comM) [Xanthomonas hortorum strain jj2001]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKARNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=710090 NMB96_RS00605 WP_043888921.1 143556..144614(-) (comM) [Xanthomonas hortorum strain jj2001]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTTGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAGGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGACGACAGCGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTTGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCATTTGCCCTGGTCGCCAGCGAGCTACCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTTGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTATGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCTAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CFQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

47.009

99.716

0.469