Detailed information NTG0071009

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K6J58_RS03620
• Genome accession: NZ_AP018772
• Coordinates: 712723..713415 (+)
• Length: 230 a.a.
• NCBI ID: WP_105887051.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain CHBN-III-1 isolate 15H02
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 707723..718415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J58_RS03600 (CHBNIII1_06970)	ampD	708994..709554 (-)	561	WP_005686728.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
K6J58_RS03605 (CHBNIII1_06980)	pilA	709669..710118 (+)	450	WP_005686726.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
K6J58_RS03610 (CHBNIII1_06990)	pilB	710115..711512 (+)	1398	WP_005686724.1	GspE/PulE family protein	Machinery gene
K6J58_RS03615 (CHBNIII1_07000)	pilC	711509..712726 (+)	1218	WP_005686722.1	type II secretion system F family protein	Machinery gene
K6J58_RS03620 (CHBNIII1_07010)	pilD	712723..713415 (+)	693	WP_105887051.1	A24 family peptidase	Machinery gene
K6J58_RS03625 (CHBNIII1_07020)	rho	713469..714731 (-)	1263	WP_005648966.1	transcription termination factor Rho	-
K6J58_RS03630 (CHBNIII1_07030)	metJ	714979..715296 (+)	318	WP_005634287.1	met regulon transcriptional regulator MetJ	-
K6J58_RS03635 (CHBNIII1_07040)	cueR	715310..715696 (-)	387	WP_005663006.1	Cu(I)-responsive transcriptional regulator	-
K6J58_RS03640 (CHBNIII1_07050)	-	715773..715979 (+)	207	WP_005686717.1	heavy-metal-associated domain-containing protein	-
K6J58_RS03645 (CHBNIII1_07060)	-	716064..716270 (+)	207	WP_105887050.1	heavy-metal-associated domain-containing protein	-
K6J58_RS03650	-	716245..716330 (+)	86	Protein_711	heavy metal-associated domain-containing protein	-
K6J58_RS03655 (CHBNIII1_07070)	-	716355..716561 (+)	207	WP_005631184.1	heavy-metal-associated domain-containing protein	-
K6J58_RS03660 (CHBNIII1_07080)	-	716635..716841 (+)	207	WP_005631184.1	heavy-metal-associated domain-containing protein	-

Sequence

Protein

• Length: 230 a.a.
• Molecular weight: 26651.62 Da
• Isoelectric Point: 8.8394

>NTDB_id=71009 K6J58_RS03620 WP_105887051.1 712723..713415(+) (pilD) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MIYFTMFLLGGIFGSALWFYLSGFITRLQQEIYATYIELFPQNFLPFQPSVSSIQQKKCGHILRYFLNVGVGFIFLQIAF
KDSIFAIWLGLTLLILWAISYLDWYYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide

• Length: 693 bp

>NTDB_id=71009 K6J58_RS03620 WP_105887051.1 712723..713415(+) (pilD) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTCGGGAGCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGCCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAATGTTGGGGTAGGATTTATATTTTTACAAATTGCTTTC
AAGGACTCTATTTTCGCTATATGGCTAGGGCTCACACTTCTTATCCTTTGGGCAATTAGTTATCTTGATTGGTACTATCA
ACTTATTTCTACTACACCCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGTATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACTTTGCCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (92-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Haemophilus influenzae 86-028NP	90	100	0.9
pilD	Haemophilus influenzae Rd KW20	89.565	100	0.896