Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMG48_RS03560 Genome accession   NZ_CP101416
Coordinates   739874..740242 (+) Length   122 a.a.
NCBI ID   WP_126387722.1    Uniprot ID   -
Organism   Pseudanabaena sp. Chao 1811     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 734874..745242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG48_RS03540 - 736350..736634 (+) 285 WP_271254013.1 hypothetical protein -
  NMG48_RS03545 - 736998..737366 (+) 369 WP_271251623.1 transposase -
  NMG48_RS03550 - 737396..737944 (+) 549 Protein_701 transposase -
  NMG48_RS03555 - 738098..739621 (+) 1524 WP_271254014.1 YifB family Mg chelatase-like AAA ATPase -
  NMG48_RS03560 pilH 739874..740242 (+) 369 WP_126387722.1 response regulator Machinery gene
  NMG48_RS03565 - 740395..740922 (+) 528 WP_126387720.1 chemotaxis protein CheW -
  NMG48_RS03570 - 741056..743401 (+) 2346 WP_271254015.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13654.92 Da        Isoelectric Point: 4.9330

>NTDB_id=710077 NMG48_RS03560 WP_126387722.1 739874..740242(+) (pilH) [Pseudanabaena sp. Chao 1811]
MSTVLVVEDSVTQREMIEDLLKGSGLIVKTAGDGIEALEQMQSSCPDIVVMDIVMPRMNGYELCRRIKTDPKTERVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPQELVGTVKQLLRKA

Nucleotide


Download         Length: 369 bp        

>NTDB_id=710077 NMG48_RS03560 WP_126387722.1 739874..740242(+) (pilH) [Pseudanabaena sp. Chao 1811]
ATGAGTACAGTTCTGGTGGTTGAAGATAGTGTCACACAGAGAGAAATGATTGAAGACTTACTTAAAGGTAGTGGTTTGAT
CGTCAAAACAGCAGGTGACGGCATAGAAGCCCTAGAGCAAATGCAAAGCAGTTGCCCAGATATCGTAGTTATGGACATTG
TCATGCCTCGCATGAATGGCTATGAACTATGCCGTCGCATTAAAACTGATCCCAAAACCGAACGCGTTCCCGTTGTAATG
TGTTCGTCTAAAGGTGAAGAATTTGATCGCTACTGGGGAATGAAGCAAGGTGCTGATGCCTATATTGCTAAACCATTTCA
GCCACAAGAGTTAGTTGGTACTGTCAAACAGTTACTTAGAAAAGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

99.18

0.721
  pilG Acinetobacter baumannii strain A118

42.982

93.443

0.402
  pilL-C Synechocystis sp. PCC 6803

40

98.361

0.393
  micA Streptococcus pneumoniae Cp1015

39.344

100

0.393