Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H7680_RS10600 Genome accession   NZ_AP023394
Coordinates   1602370..1603035 (-) Length   221 a.a.
NCBI ID   WP_003056754.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597370..1608035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS07875 (SDSE159_15350) - 1600632..1601612 (-) 981 WP_184006703.1 IS30 family transposase -
  H7680_RS07880 (SDSE159_15360) raiA 1601742..1602290 (-) 549 WP_014612499.1 ribosome-associated translation inhibitor RaiA -
  H7680_RS10600 comFC/cflB 1602370..1603035 (-) 666 WP_003056754.1 ComF family protein Machinery gene
  H7680_RS07890 (SDSE159_15380) comFA/cflA 1603007..1604332 (-) 1326 WP_184006705.1 DEAD/DEAH box helicase Machinery gene
  H7680_RS07895 (SDSE159_15390) - 1604388..1605026 (+) 639 WP_004230529.1 YigZ family protein -
  H7680_RS07900 (SDSE159_15400) cysK 1605130..1606065 (+) 936 WP_004230536.1 cysteine synthase A -
  H7680_RS07905 (SDSE159_15410) - 1606218..1606577 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  H7680_RS07910 (SDSE159_15420) - 1606577..1607977 (-) 1401 WP_014612502.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25334.36 Da        Isoelectric Point: 8.7003

>NTDB_id=70996 H7680_RS10600 WP_003056754.1 1602370..1603035(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQACNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=70996 H7680_RS10600 WP_003056754.1 1602370..1603035(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAGCCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403