Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   PFZ59_RS00080 Genome accession   NZ_CP116393
Coordinates   8268..8933 (-) Length   221 a.a.
NCBI ID   WP_208582438.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3268..13933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS00070 (PFZ59_00070) - 6344..7600 (+) 1257 WP_277697753.1 ISL3 family transposase -
  PFZ59_RS00075 (PFZ59_00075) raiA 7649..8191 (-) 543 WP_208582440.1 ribosome-associated translation inhibitor RaiA -
  PFZ59_RS00080 (PFZ59_00080) comFC/cflB 8268..8933 (-) 666 WP_208582438.1 ComF family protein Machinery gene
  PFZ59_RS00085 (PFZ59_00085) comFA/cflA 8926..10218 (-) 1293 WP_208582436.1 DEAD/DEAH box helicase Machinery gene
  PFZ59_RS00090 (PFZ59_00090) - 10275..10907 (+) 633 WP_277697217.1 YigZ family protein -
  PFZ59_RS00095 (PFZ59_00095) cysK 10997..11923 (+) 927 WP_002937015.1 cysteine synthase A -
  PFZ59_RS00100 (PFZ59_00100) - 11950..12321 (-) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  PFZ59_RS00105 (PFZ59_00105) - 12323..13723 (-) 1401 WP_208582434.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25719.51 Da        Isoelectric Point: 8.4541

>NTDB_id=709809 PFZ59_RS00080 WP_208582438.1 8268..8933(-) (comFC/cflB) [Streptococcus suis strain SS/UPM/MY/F001]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGTCEECFATFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=709809 PFZ59_RS00080 WP_208582438.1 8268..8933(-) (comFC/cflB) [Streptococcus suis strain SS/UPM/MY/F001]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCACCTGTGAAGAATGTTTTGCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGTCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTAAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTCGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48