Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMK59_RS01825 Genome accession   NZ_CP101302
Coordinates   399656..400192 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 2000-3039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 394656..405192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK59_RS01805 (NMK59_01805) aphA 394945..395658 (+) 714 WP_001226928.1 acid phosphatase AphA -
  NMK59_RS01810 (NMK59_01810) yjbQ 395769..396185 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NMK59_RS01815 (NMK59_01815) yjbR 396189..396545 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NMK59_RS01820 (NMK59_01820) uvrA 396580..399402 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  NMK59_RS01825 (NMK59_01825) ssb 399656..400192 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMK59_RS01830 (NMK59_01830) yjcB 400291..400572 (-) 282 WP_001295689.1 YjcB family protein -
  NMK59_RS01835 (NMK59_01835) pdeC 401002..402588 (+) 1587 WP_000019530.1 c-di-GMP phosphodiesterase PdeC -
  NMK59_RS01840 (NMK59_01840) soxS 402591..402914 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NMK59_RS01845 (NMK59_01845) soxR 403000..403464 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=709554 NMK59_RS01825 WP_000168305.1 399656..400192(+) (ssb) [Escherichia coli strain 2000-3039]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=709554 NMK59_RS01825 WP_000168305.1 399656..400192(+) (ssb) [Escherichia coli strain 2000-3039]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489