Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NMT99_RS21110 Genome accession   NZ_CP101290
Coordinates   4077299..4077817 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain LjM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4072299..4082817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS21080 yyaJ 4072801..4074156 (+) 1356 WP_029318525.1 MFS transporter -
  NMT99_RS21085 maa 4074190..4074744 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  NMT99_RS21090 yyaH 4074762..4075142 (-) 381 WP_029726089.1 VOC family protein -
  NMT99_RS21095 ccpB 4075198..4076133 (-) 936 WP_029726088.1 transcriptional regulator CcpB -
  NMT99_RS21100 xth 4076193..4076951 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  NMT99_RS21105 rpsR 4077016..4077255 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NMT99_RS21110 ssbA 4077299..4077817 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NMT99_RS21115 rpsF 4077858..4078145 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NMT99_RS21120 ychF 4078256..4079356 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NMT99_RS21125 yyaE 4079483..4081486 (-) 2004 WP_029726086.1 molybdopterin-dependent oxidoreductase -
  NMT99_RS21130 yyzM 4081537..4081743 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=709514 NMT99_RS21110 WP_003219228.1 4077299..4077817(-) (ssbA) [Bacillus subtilis strain LjM2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=709514 NMT99_RS21110 WP_003219228.1 4077299..4077817(-) (ssbA) [Bacillus subtilis strain LjM2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378